Wall clock time and date at job start Mon Mar 30 2020 04:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46693 * 2 1 4 4 C 1.50695 * 109.46918 * 239.99618 * 2 1 3 5 5 H 1.08001 * 120.00119 * 275.10235 * 4 2 1 6 6 C 1.37877 * 120.00250 * 95.10692 * 4 2 1 7 7 N 1.31507 * 120.00706 * 184.90733 * 6 4 2 8 8 Si 1.86807 * 119.99617 * 4.90415 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82552 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82178 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82491 * 8 6 4 12 12 C 1.50699 * 109.47040 * 119.99474 * 2 1 3 13 13 O 1.21269 * 119.99913 * 120.00010 * 12 2 1 14 14 N 1.34779 * 120.00366 * 300.00135 * 12 2 1 15 15 C 1.38936 * 120.00183 * 180.02562 * 14 12 2 16 16 N 1.32409 * 119.20148 * 359.72546 * 15 14 12 17 17 C 1.32279 * 120.74596 * 179.75961 * 16 15 14 18 18 C 1.38609 * 119.18426 * 0.50935 * 17 16 15 19 19 C 1.38611 * 118.53846 * 359.74488 * 18 17 16 20 20 N 1.32273 * 119.18337 * 0.02562 * 19 18 17 21 21 H 1.08997 * 109.46947 * 55.07979 * 1 2 3 22 22 H 1.08995 * 109.46913 * 295.07456 * 1 2 3 23 23 H 1.08998 * 109.46708 * 175.07670 * 1 2 3 24 24 H 0.96994 * 120.00587 * 179.97438 * 7 6 4 25 25 H 0.96999 * 119.99239 * 359.97438 * 14 12 2 26 26 H 1.07998 * 120.40238 * 180.23473 * 17 16 15 27 27 H 1.08000 * 120.73366 * 179.77093 * 18 17 16 28 28 H 1.08000 * 120.41081 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0121 -2.3573 7 7 2.7081 -0.6129 -3.4615 8 14 2.3181 1.8792 -2.3158 9 1 3.6038 2.3929 -1.7788 10 1 2.1126 2.4002 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0324 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.1703 -0.9044 3.5891 16 7 2.9264 -1.9823 3.4493 17 6 3.3882 -2.6264 4.5084 18 6 3.0626 -2.1659 5.7746 19 6 2.2649 -1.0377 5.8841 20 7 1.8405 -0.4386 4.7838 21 1 -0.3633 0.5883 -0.8426 22 1 -0.3633 0.4355 0.9308 23 1 -0.3633 -1.0239 -0.0882 24 1 2.9399 -0.1046 -4.2544 25 1 1.1494 0.5391 2.5435 26 1 4.0076 -3.5029 4.3879 27 1 3.4229 -2.6747 6.6565 28 1 1.9930 -0.6526 6.8557 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598802988.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:50 Heat of formation + Delta-G solvation = 29.454063 kcal Electronic energy + Delta-G solvation = -14514.554390 eV Core-core repulsion = 11952.656499 eV Total energy + Delta-G solvation = -2561.897891 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99521 -38.82489 -34.50819 -33.80421 -33.46082 -31.52285 -30.33325 -25.31605 -24.69569 -24.24127 -22.18298 -19.65700 -18.25363 -17.19113 -16.82521 -15.79806 -15.44297 -15.25496 -14.58825 -14.16891 -13.84365 -13.34730 -13.16599 -12.53488 -12.32673 -11.56134 -11.17573 -10.95028 -10.79175 -10.72645 -10.62329 -10.27098 -9.86703 -9.25231 -9.16020 -8.64000 -8.49925 -8.40891 -6.11226 -4.11864 1.10189 1.26310 2.99598 3.22989 3.28460 3.31626 3.42239 4.13912 4.28562 4.34406 4.66642 4.82483 5.15207 5.22344 5.25440 5.70410 5.86547 6.08328 6.23884 6.29743 6.44179 6.72627 6.78132 7.10224 7.24035 7.40216 7.64311 8.39511 8.52172 8.95227 9.04123 9.47036 11.01633 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.052071 B = 0.007248 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.601290 B = 3861.957651 C = 4087.594572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.003 3.997 3 H 0.059 0.941 4 C -0.499 4.499 5 H 0.088 0.912 6 C 0.074 3.926 7 N -0.891 5.891 8 Si 0.870 3.130 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.263 1.263 12 C 0.507 3.493 13 O -0.452 6.452 14 N -0.650 5.650 15 C 0.543 3.457 16 N -0.502 5.502 17 C 0.177 3.823 18 C -0.281 4.281 19 C 0.175 3.825 20 N -0.561 5.561 21 H 0.059 0.941 22 H 0.027 0.973 23 H 0.054 0.946 24 H 0.266 0.734 25 H 0.417 0.583 26 H 0.167 0.833 27 H 0.143 0.857 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 1.658 16.967 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 H 0.076 0.924 4 C -0.537 4.537 5 H 0.106 0.894 6 C -0.128 4.128 7 N -0.528 5.528 8 Si 0.697 3.303 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.188 1.188 12 C 0.294 3.706 13 O -0.316 6.316 14 N -0.301 5.301 15 C 0.188 3.812 16 N -0.222 5.222 17 C 0.008 3.992 18 C -0.306 4.306 19 C 0.008 3.992 20 N -0.282 5.282 21 H 0.078 0.922 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.254 0.746 26 H 0.184 0.816 27 H 0.161 0.839 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.879 1.438 15.629 15.807 hybrid contribution 0.106 0.997 0.875 1.331 sum -1.772 2.435 16.504 16.776 Atomic orbital electron populations 1.21995 0.96395 1.01699 0.99379 1.19387 0.94333 0.97040 0.91171 0.92352 1.20712 1.43525 0.96239 0.93185 0.89401 1.25016 0.94418 0.98108 0.95297 1.69869 1.45433 1.35818 1.01673 0.86974 0.79113 0.86543 0.77652 1.20018 1.21104 1.18788 1.22390 0.79987 0.85500 0.82742 1.90702 1.32440 1.23675 1.84806 1.44247 1.51509 1.30926 1.03409 1.19890 0.88074 0.87133 0.86090 1.68646 1.12183 1.07788 1.33627 1.23253 0.92215 0.96439 0.87246 1.22655 1.06056 1.01730 1.00153 1.22885 0.89778 0.90257 0.96308 1.67862 1.27548 1.34652 0.98167 0.92243 0.95380 0.92681 0.92395 0.74563 0.81572 0.83934 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.12 37.16 0.34 -2.34 15 2 C 0.00 0.06 2.30 -92.92 -0.21 -0.15 15 3 H 0.06 1.29 5.29 -51.93 -0.27 1.02 15 4 C -0.50 -14.15 8.36 -34.44 -0.29 -14.43 15 5 H 0.09 2.83 7.61 -52.49 -0.40 2.43 15 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 15 7 N -0.89 -27.15 13.96 55.43 0.77 -26.38 15 8 Si 0.87 20.60 26.99 -169.99 -4.59 16.02 15 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 11 H -0.26 -5.69 6.82 56.52 0.39 -5.31 15 12 C 0.51 11.50 7.11 -10.99 -0.08 11.43 15 13 O -0.45 -11.99 13.97 5.57 0.08 -11.91 15 14 N -0.65 -12.07 5.26 -13.07 -0.07 -12.14 15 15 C 0.54 9.93 8.38 -322.26 -2.70 7.23 15 16 N -0.50 -9.60 7.87 -13.83 -0.11 -9.71 15 17 C 0.18 2.46 11.30 -17.22 -0.19 2.26 15 18 C -0.28 -3.00 10.16 -39.31 -0.40 -3.40 15 19 C 0.18 2.01 11.30 -17.22 -0.19 1.81 15 20 N -0.56 -8.57 10.46 -13.83 -0.14 -8.71 15 21 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 22 H 0.03 0.44 7.43 -51.93 -0.39 0.05 15 23 H 0.05 1.11 8.14 -51.93 -0.42 0.68 15 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 25 H 0.42 6.37 8.17 -40.82 -0.33 6.04 15 26 H 0.17 1.79 8.06 -52.49 -0.42 1.37 15 27 H 0.14 0.97 8.06 -52.49 -0.42 0.55 15 28 H 0.17 1.20 8.06 -52.49 -0.42 0.78 15 LS Contribution 250.31 15.07 3.77 3.77 Total: -1.00 -34.72 250.31 -6.77 -41.49 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -2.66 Total: 3.15 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -3.83 Total: 4.42 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.45 Total: -56.95 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.59 Total: 16.02 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -34.72 -6.77 -41.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598802988.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.948 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds