Wall clock time and date at job start Mon Mar 30 2020 04:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47132 * 2 1 4 4 C 1.50707 * 109.46795 * 119.99442 * 2 1 3 5 5 H 1.07994 * 120.00357 * 120.00130 * 4 2 1 6 6 C 1.37876 * 119.99796 * 300.00324 * 4 2 1 7 7 N 1.31515 * 120.00035 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00051 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47390 * 89.99711 * 8 6 4 10 10 H 1.48500 * 109.47429 * 209.99569 * 8 6 4 11 11 H 1.48501 * 109.47400 * 329.99567 * 8 6 4 12 12 C 1.50694 * 109.47212 * 239.99063 * 2 1 3 13 13 O 1.21286 * 120.00187 * 240.00261 * 12 2 1 14 14 N 1.34771 * 120.00249 * 60.00588 * 12 2 1 15 15 C 1.39404 * 120.00286 * 185.08357 * 14 12 2 16 16 C 1.39231 * 120.08514 * 174.92851 * 15 14 12 17 17 N 1.31950 * 119.90588 * 180.02562 * 16 15 14 18 18 C 1.32248 * 120.07154 * 0.02562 * 17 16 15 19 19 C 1.38219 * 120.17098 * 0.27550 * 18 17 16 20 20 N 1.32208 * 120.09352 * 359.43638 * 19 18 17 21 21 H 1.08992 * 109.47666 * 300.00997 * 1 2 3 22 22 H 1.09006 * 109.46739 * 60.01039 * 1 2 3 23 23 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 24 24 H 0.97004 * 120.00345 * 180.02562 * 7 6 4 25 25 H 0.96999 * 119.99758 * 5.08361 * 14 12 2 26 26 H 1.08004 * 120.04723 * 0.04724 * 16 15 14 27 27 H 1.08002 * 119.91582 * 179.97438 * 18 17 16 28 28 H 1.07999 * 119.94670 * 179.69996 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1317 6 6 1.6990 -0.2392 2.4828 7 7 0.9433 0.8304 2.6033 8 14 2.3221 -1.1191 4.0081 9 1 3.6301 -0.5436 4.4121 10 1 1.3441 -0.9484 5.1124 11 1 2.4877 -2.5650 3.7127 12 6 2.0323 -0.7106 -1.2303 13 8 2.7296 -1.6967 -1.1189 14 7 1.7069 -0.2503 -2.4544 15 6 2.0817 -0.9659 -3.5906 16 6 1.6569 -0.5495 -4.8494 17 7 2.0134 -1.2297 -5.9224 18 6 2.7727 -2.3058 -5.8028 19 6 3.1910 -2.7256 -4.5540 20 7 2.8425 -2.0457 -3.4750 21 1 -0.3634 0.5139 0.8898 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7092 1.1622 3.4842 25 1 1.2118 0.5789 -2.5450 26 1 1.0367 0.3293 -4.9476 27 1 3.0627 -2.8610 -6.6826 28 1 3.8070 -3.6077 -4.4601 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598804153.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:38 Heat of formation + Delta-G solvation = -2.917809 kcal Electronic energy + Delta-G solvation = -14464.440593 eV Core-core repulsion = 11901.138953 eV Total energy + Delta-G solvation = -2563.301640 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.22394 -40.40116 -36.24422 -35.80018 -34.84550 -32.71009 -30.99915 -27.23665 -26.14653 -25.36620 -23.85467 -21.33851 -19.39262 -18.41788 -18.08101 -17.66853 -17.09613 -16.51553 -16.40353 -15.55213 -15.35481 -14.86548 -14.44283 -13.82507 -13.58466 -13.00338 -12.77878 -12.65982 -12.52632 -12.38874 -12.19088 -12.02583 -11.63094 -11.08406 -10.83276 -10.49869 -9.73642 -9.40663 -8.17661 -6.27855 -0.14845 0.22928 1.40109 1.41202 1.52556 1.84947 1.93380 2.43728 2.88110 3.12695 3.34154 3.43603 3.52002 4.17487 4.28393 4.39785 4.58163 4.72254 4.90845 4.98085 5.13723 5.45683 5.58294 5.72201 5.89147 6.10902 6.24741 6.54348 6.79066 6.97748 7.34580 7.45440 8.88129 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.059571 B = 0.006682 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.916630 B = 4189.467316 C = 4578.488322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.531 4.531 5 H 0.048 0.952 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.511 3.489 13 O -0.520 6.520 14 N -0.649 5.649 15 C 0.296 3.704 16 C 0.024 3.976 17 N -0.428 5.428 18 C 0.012 3.988 19 C 0.075 3.925 20 N -0.489 5.489 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.020 0.980 24 H 0.266 0.734 25 H 0.434 0.566 26 H 0.202 0.798 27 H 0.208 0.792 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 -0.984 -14.407 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.066 0.934 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.300 3.700 13 O -0.391 6.391 14 N -0.298 5.298 15 C 0.062 3.938 16 C -0.141 4.141 17 N -0.142 5.142 18 C -0.148 4.148 19 C -0.086 4.086 20 N -0.211 5.211 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.274 0.726 26 H 0.219 0.781 27 H 0.225 0.775 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.061 -1.543 -14.058 14.143 hybrid contribution 0.175 -0.069 1.111 1.127 sum 0.236 -1.612 -12.947 13.049 Atomic orbital electron populations 1.21592 0.94625 0.99511 1.02242 1.18855 0.95561 0.96217 0.88601 0.93144 1.21257 1.31820 1.12840 0.91064 0.93411 1.25545 0.95115 0.95732 1.01303 1.69928 1.36982 1.23410 1.24443 0.85607 0.78419 0.78726 0.79208 1.20022 1.19866 1.20545 1.22050 0.78599 0.84478 0.84883 1.90624 1.35421 1.26689 1.86358 1.43851 1.56095 1.26579 1.03308 1.20016 0.93547 0.91485 0.88725 1.23578 1.02126 1.02621 0.85787 1.68426 1.08912 1.05889 1.30950 1.24124 0.96442 0.94775 0.99487 1.24248 0.96967 0.99268 0.88073 1.68465 1.11564 1.06555 1.34482 0.90741 0.92347 0.96058 0.92477 0.72555 0.78133 0.77546 0.79113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.87 71.98 0.64 -4.69 15 2 C 0.03 1.42 2.64 -12.29 -0.03 1.39 15 3 H 0.05 2.50 8.14 -2.39 -0.02 2.48 15 4 C -0.53 -30.42 8.37 25.60 0.21 -30.20 15 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 15 6 C 0.02 1.25 5.30 84.65 0.45 1.70 15 7 N -0.91 -49.99 11.32 21.45 0.24 -49.74 15 8 Si 0.95 44.65 29.54 68.60 2.03 46.68 15 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 15 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 15 12 C 0.51 23.36 7.11 87.66 0.62 23.99 15 13 O -0.52 -28.03 13.75 -3.05 -0.04 -28.07 15 14 N -0.65 -22.04 5.25 -308.14 -1.62 -23.65 15 15 C 0.30 9.66 7.43 132.89 0.99 10.65 15 16 C 0.02 0.59 11.09 84.91 0.94 1.53 15 17 N -0.43 -10.31 10.49 -194.70 -2.04 -12.35 15 18 C 0.01 0.24 11.21 84.63 0.95 1.19 15 19 C 0.08 1.96 11.22 84.63 0.95 2.90 15 20 N -0.49 -17.97 8.07 -192.42 -1.55 -19.52 15 21 H 0.07 3.62 6.07 -2.39 -0.01 3.60 15 22 H 0.06 1.97 7.69 -2.38 -0.02 1.96 15 23 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 24 H 0.27 13.86 8.31 -92.71 -0.77 13.09 15 25 H 0.43 10.90 8.29 -92.71 -0.77 10.13 15 26 H 0.20 3.28 8.06 -2.91 -0.02 3.26 15 27 H 0.21 2.42 8.06 -2.91 -0.02 2.39 15 28 H 0.19 3.71 8.06 -2.91 -0.02 3.68 15 Total: -1.00 -72.87 250.54 3.15 -69.71 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.42 Total: 8.50 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 5.72 Total: 8.44 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -4.97 Total: -105.27 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.04 Total: -28.07 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.87 3.15 -69.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598804153.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.794 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds