Wall clock time and date at job start Mon Mar 30 2020 04:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47443 * 2 1 4 4 C 1.50701 * 109.46880 * 240.00061 * 2 1 3 5 5 H 1.07996 * 119.99966 * 239.99842 * 4 2 1 6 6 C 1.37875 * 119.99956 * 60.00269 * 4 2 1 7 7 N 1.31514 * 120.00300 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00028 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46901 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47340 * 119.99797 * 8 6 4 11 11 H 1.48503 * 109.47140 * 240.00081 * 8 6 4 12 12 C 1.50699 * 109.47258 * 120.00194 * 2 1 3 13 13 O 1.21276 * 119.99902 * 119.99316 * 12 2 1 14 14 N 1.34773 * 120.00029 * 300.00223 * 12 2 1 15 15 C 1.39443 * 120.00419 * 185.07994 * 14 12 2 16 16 C 1.39383 * 120.15347 * 174.89911 * 15 14 12 17 17 C 1.38617 * 117.91429 * 180.02562 * 16 15 14 18 18 C 1.38780 * 118.02825 * 0.27803 * 17 16 15 19 19 N 1.31822 * 119.99696 * 359.43813 * 18 17 16 20 20 N 1.28350 * 122.27695 * 0.58250 * 19 18 17 21 21 H 1.08992 * 109.46650 * 299.99856 * 1 2 3 22 22 H 1.08995 * 109.47003 * 59.99708 * 1 2 3 23 23 H 1.08996 * 109.46713 * 179.97438 * 1 2 3 24 24 H 0.96994 * 120.00241 * 179.97438 * 7 6 4 25 25 H 0.97002 * 120.00266 * 5.07330 * 14 12 2 26 26 H 1.08005 * 121.04706 * 0.04777 * 16 15 14 27 27 H 1.08001 * 120.99161 * 180.02562 * 17 16 15 28 28 H 1.07997 * 119.99879 * 179.71944 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1483 -2.2856 -3.6038 10 1 1.1677 -1.5865 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.2564 -0.8421 3.5911 16 6 2.0064 -0.3029 4.8519 17 6 2.5765 -0.9283 5.9498 18 6 3.3650 -2.0481 5.7259 19 7 3.5439 -2.4934 4.4981 20 7 3.0189 -1.9191 3.4774 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0276 -0.0005 24 1 0.7088 1.1614 -3.4843 25 1 1.0902 0.4932 2.5450 26 1 1.3877 0.5745 4.9697 27 1 2.4152 -0.5528 6.9495 28 1 3.8283 -2.5574 6.5580 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598813376.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:15 Heat of formation + Delta-G solvation = 30.374771 kcal Electronic energy + Delta-G solvation = -14453.213256 eV Core-core repulsion = 11891.355290 eV Total energy + Delta-G solvation = -2561.857966 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93870 -38.83077 -34.82906 -33.84012 -32.93427 -31.19170 -29.89190 -25.22041 -24.75877 -24.25782 -22.33338 -19.78884 -17.88252 -16.96432 -16.65812 -16.12322 -15.55574 -15.11747 -14.47262 -13.98256 -13.81228 -13.18316 -13.07056 -12.63667 -11.69589 -11.17959 -11.05060 -10.98786 -10.73466 -10.67693 -10.30830 -10.16474 -10.00724 -9.44692 -9.03918 -8.62977 -8.39054 -8.37068 -6.08429 -4.11800 0.92380 1.15831 3.21871 3.31707 3.39521 3.45473 3.50075 3.97871 4.36740 4.45049 4.68372 4.71462 4.87442 5.10809 5.25556 5.61524 5.82384 6.10755 6.12276 6.49455 6.70830 6.78025 6.84384 7.35399 7.63002 7.79422 7.99737 8.24067 8.92111 8.98844 9.13614 9.54471 10.99333 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.058607 B = 0.006691 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.642100 B = 4183.666430 C = 4577.937499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.034 3.966 3 H 0.057 0.943 4 C -0.503 4.503 5 H 0.077 0.923 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.503 3.497 13 O -0.468 6.468 14 N -0.663 5.663 15 C 0.311 3.689 16 C -0.165 4.165 17 C -0.093 4.093 18 C -0.012 4.012 19 N -0.215 5.215 20 N -0.234 5.234 21 H 0.012 0.988 22 H 0.097 0.903 23 H 0.034 0.966 24 H 0.261 0.739 25 H 0.415 0.585 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 1.889 15.171 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 H 0.075 0.925 4 C -0.541 4.541 5 H 0.095 0.905 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.292 3.708 13 O -0.335 6.335 14 N -0.311 5.311 15 C 0.073 3.927 16 C -0.198 4.198 17 C -0.122 4.122 18 C -0.179 4.179 19 N -0.057 5.057 20 N -0.085 5.085 21 H 0.031 0.969 22 H 0.115 0.885 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.252 0.748 26 H 0.166 0.834 27 H 0.165 0.835 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.060 0.170 13.747 13.749 hybrid contribution -0.795 1.215 0.370 1.498 sum -0.855 1.385 14.117 14.211 Atomic orbital electron populations 1.21794 0.96288 1.00141 1.01140 1.18945 0.94308 0.96941 0.88542 0.92507 1.21180 1.31190 1.12983 0.88777 0.90474 1.24940 0.94985 0.95032 0.99190 1.69865 1.37040 1.23089 1.23616 0.86364 0.78661 0.79845 0.82242 1.19398 1.20995 1.21006 1.22554 0.79579 0.85045 0.83626 1.90691 1.33762 1.23840 1.85174 1.44412 1.46604 1.35790 1.04306 1.20588 0.92445 0.91996 0.87703 1.21908 1.03605 1.02573 0.91677 1.22169 0.95072 0.95173 0.99832 1.24165 0.99519 0.96609 0.97623 1.73100 1.13453 1.22585 0.96544 1.73775 1.07668 1.05817 1.21220 0.96946 0.88457 0.94693 0.92911 0.74813 0.83422 0.83457 0.81623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.86 37.16 0.33 -2.66 15 2 C 0.03 0.82 2.65 -92.92 -0.25 0.58 15 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 15 4 C -0.50 -14.15 8.37 -34.44 -0.29 -14.43 15 5 H 0.08 2.31 6.75 -52.49 -0.35 1.96 15 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 15 7 N -0.90 -24.74 11.32 55.43 0.63 -24.12 15 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 15 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 12 C 0.50 11.56 7.11 -10.99 -0.08 11.48 15 13 O -0.47 -12.63 13.76 5.56 0.08 -12.56 15 14 N -0.66 -11.68 5.32 -11.31 -0.06 -11.74 15 15 C 0.31 5.34 7.51 -154.46 -1.16 4.19 15 16 C -0.16 -1.95 10.06 -39.02 -0.39 -2.34 15 17 C -0.09 -0.94 10.20 -39.24 -0.40 -1.34 15 18 C -0.01 -0.15 11.31 -17.36 -0.20 -0.34 15 19 N -0.21 -3.83 11.49 30.57 0.35 -3.48 15 20 N -0.23 -4.85 9.09 31.28 0.28 -4.56 15 21 H 0.01 0.21 7.46 -51.93 -0.39 -0.18 15 22 H 0.10 2.37 6.07 -51.93 -0.32 2.06 15 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 25 H 0.41 5.62 8.00 -40.82 -0.33 5.29 15 26 H 0.15 1.19 8.06 -52.48 -0.42 0.76 15 27 H 0.15 0.84 8.06 -52.49 -0.42 0.41 15 28 H 0.17 1.38 8.06 -52.49 -0.42 0.96 15 LS Contribution 250.25 15.07 3.77 3.77 Total: -1.00 -33.94 250.25 -5.13 -39.07 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -2.63 Total: 0.21 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.53 Total: -3.35 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.20 Total: -43.90 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.94 -5.13 -39.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598813376.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.441 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds