Wall clock time and date at job start Mon Mar 30 2020 04:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47443 * 2 1 4 4 C 1.50701 * 109.46880 * 240.00061 * 2 1 3 5 5 H 1.07996 * 119.99966 * 239.99842 * 4 2 1 6 6 C 1.37875 * 119.99956 * 60.00269 * 4 2 1 7 7 N 1.31514 * 120.00300 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00028 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46901 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47340 * 119.99797 * 8 6 4 11 11 H 1.48503 * 109.47140 * 240.00081 * 8 6 4 12 12 C 1.50699 * 109.47258 * 120.00194 * 2 1 3 13 13 O 1.21276 * 119.99902 * 119.99316 * 12 2 1 14 14 N 1.34773 * 120.00029 * 300.00223 * 12 2 1 15 15 C 1.39443 * 120.00419 * 185.07994 * 14 12 2 16 16 C 1.39383 * 120.15347 * 174.89911 * 15 14 12 17 17 C 1.38617 * 117.91429 * 180.02562 * 16 15 14 18 18 C 1.38780 * 118.02825 * 0.27803 * 17 16 15 19 19 N 1.31822 * 119.99696 * 359.43813 * 18 17 16 20 20 N 1.28350 * 122.27695 * 0.58250 * 19 18 17 21 21 H 1.08992 * 109.46650 * 299.99856 * 1 2 3 22 22 H 1.08995 * 109.47003 * 59.99708 * 1 2 3 23 23 H 1.08996 * 109.46713 * 179.97438 * 1 2 3 24 24 H 0.96994 * 120.00241 * 179.97438 * 7 6 4 25 25 H 0.97002 * 120.00266 * 5.07330 * 14 12 2 26 26 H 1.08005 * 121.04706 * 0.04777 * 16 15 14 27 27 H 1.08001 * 120.99161 * 180.02562 * 17 16 15 28 28 H 1.07997 * 119.99879 * 179.71944 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1483 -2.2856 -3.6038 10 1 1.1677 -1.5865 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.2564 -0.8421 3.5911 16 6 2.0064 -0.3029 4.8519 17 6 2.5765 -0.9283 5.9498 18 6 3.3650 -2.0481 5.7259 19 7 3.5439 -2.4934 4.4981 20 7 3.0189 -1.9191 3.4774 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0276 -0.0005 24 1 0.7088 1.1614 -3.4843 25 1 1.0902 0.4932 2.5450 26 1 1.3877 0.5745 4.9697 27 1 2.4152 -0.5528 6.9495 28 1 3.8283 -2.5574 6.5580 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598813376.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:14 Heat of formation + Delta-G solvation = 5.231077 kcal Electronic energy + Delta-G solvation = -14454.303568 eV Core-core repulsion = 11891.355290 eV Total energy + Delta-G solvation = -2562.948278 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.13837 -40.43133 -36.31575 -35.82560 -33.95284 -32.91673 -31.41292 -27.24376 -26.03137 -25.45426 -23.91426 -21.39406 -19.24432 -18.39202 -18.15063 -17.53301 -17.09506 -16.57633 -16.32928 -15.42977 -15.19180 -14.68860 -14.49914 -13.99240 -13.55383 -13.00042 -12.78471 -12.63292 -12.43733 -12.20532 -12.13879 -12.05440 -11.13174 -11.07592 -10.74410 -10.52012 -10.12217 -9.74056 -8.18456 -6.28279 -0.03101 0.08050 1.38127 1.40491 1.54042 1.84759 1.91213 2.43728 2.77834 3.11589 3.31443 3.63657 3.91797 4.01752 4.23682 4.31099 4.71094 4.82191 4.89278 4.95100 5.01254 5.19521 5.46022 5.55985 5.72855 5.90389 6.15692 6.48890 6.79563 7.29958 7.41957 7.96580 8.87538 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.058607 B = 0.006691 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.642100 B = 4183.666430 C = 4577.937499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.273 1.273 12 C 0.508 3.492 13 O -0.522 6.522 14 N -0.648 5.648 15 C 0.278 3.722 16 C -0.147 4.147 17 C -0.073 4.073 18 C 0.000 4.000 19 N -0.272 5.272 20 N -0.305 5.305 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.021 0.979 24 H 0.266 0.734 25 H 0.434 0.566 26 H 0.194 0.806 27 H 0.208 0.792 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.090 3.279 17.886 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.571 4.571 5 H 0.064 0.936 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.198 1.198 12 C 0.297 3.703 13 O -0.393 6.393 14 N -0.298 5.298 15 C 0.039 3.961 16 C -0.179 4.179 17 C -0.102 4.102 18 C -0.168 4.168 19 N -0.111 5.111 20 N -0.153 5.153 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.275 0.725 26 H 0.212 0.788 27 H 0.225 0.775 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.985 1.582 16.498 16.603 hybrid contribution -0.490 0.807 -0.227 0.971 sum -1.475 2.389 16.272 16.512 Atomic orbital electron populations 1.21606 0.94442 0.99639 1.02368 1.18857 0.95730 0.96101 0.88392 0.93039 1.21292 1.31798 1.12799 0.91177 0.93650 1.25523 0.95109 0.95721 1.01214 1.69922 1.36989 1.23365 1.24400 0.85572 0.78409 0.78571 0.79509 1.20867 1.19724 1.19802 1.22136 0.78881 0.84198 0.85072 1.90667 1.36244 1.26075 1.86309 1.43790 1.46779 1.36062 1.03198 1.20840 0.93573 0.92592 0.89050 1.22424 1.02803 1.03181 0.89447 1.22847 0.92284 0.93172 1.01860 1.24987 0.98195 0.96906 0.96757 1.72972 1.15624 1.24363 0.98181 1.73544 1.09927 1.08176 1.23660 0.92163 0.90624 0.95939 0.92435 0.72525 0.78846 0.77479 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.86 71.98 0.64 -4.75 15 2 C 0.03 1.52 2.65 -12.28 -0.03 1.49 15 3 H 0.05 2.59 8.14 -2.39 -0.02 2.57 15 4 C -0.53 -31.18 8.37 25.60 0.21 -30.97 15 5 H 0.05 2.90 6.75 -2.91 -0.02 2.88 15 6 C 0.02 1.34 5.30 84.65 0.45 1.79 15 7 N -0.91 -50.29 11.32 21.45 0.24 -50.05 15 8 Si 0.95 45.50 29.54 68.60 2.03 47.53 15 9 H -0.28 -14.06 7.11 99.48 0.71 -13.35 15 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 15 12 C 0.51 24.12 7.11 87.66 0.62 24.74 15 13 O -0.52 -29.91 13.76 -3.02 -0.04 -29.95 15 14 N -0.65 -22.49 5.32 -308.10 -1.64 -24.12 15 15 C 0.28 9.32 7.51 132.96 1.00 10.31 15 16 C -0.15 -2.86 10.06 22.64 0.23 -2.63 15 17 C -0.07 -1.07 10.20 22.49 0.23 -0.84 15 18 C 0.00 0.00 11.31 84.82 0.96 0.96 15 19 N -0.27 -9.71 11.49 -57.21 -0.66 -10.37 15 20 N -0.31 -12.96 9.09 -54.94 -0.50 -13.46 15 21 H 0.06 2.01 7.46 -2.39 -0.02 1.99 15 22 H 0.08 3.68 6.07 -2.39 -0.01 3.66 15 23 H 0.02 0.99 8.14 -2.39 -0.02 0.98 15 24 H 0.27 13.91 8.31 -92.71 -0.77 13.14 15 25 H 0.43 10.83 8.00 -92.71 -0.74 10.09 15 26 H 0.19 1.88 8.06 -2.91 -0.02 1.86 15 27 H 0.21 0.62 8.06 -2.91 -0.02 0.59 15 28 H 0.21 2.51 8.06 -2.91 -0.02 2.49 15 Total: -1.00 -81.00 250.25 4.19 -76.82 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 0.45 Total: 3.49 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 4.31 Total: 0.12 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -2.55 Total: -98.00 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.04 Total: -29.95 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -81.00 4.19 -76.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598813376.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.049 kcal (2) G-P(sol) polarization free energy of solvation -81.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds