Wall clock time and date at job start Mon Mar 30 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46870 * 2 1 4 4 C 1.50700 * 109.47065 * 119.99743 * 2 1 3 5 5 H 1.07999 * 120.00160 * 120.00542 * 4 2 1 6 6 C 1.37877 * 119.99948 * 300.00172 * 4 2 1 7 7 N 1.31513 * 120.00464 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99916 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46895 * 59.99910 * 8 6 4 10 10 H 1.48498 * 109.47282 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46968 * 300.00000 * 8 6 4 12 12 C 1.50694 * 109.47323 * 239.99784 * 2 1 3 13 13 O 1.21270 * 120.00249 * 240.00041 * 12 2 1 14 14 N 1.34778 * 119.99554 * 59.99864 * 12 2 1 15 15 C 1.39446 * 119.99668 * 185.08842 * 14 12 2 16 16 C 1.39389 * 120.14877 * 174.92100 * 15 14 12 17 17 C 1.38628 * 117.91047 * 180.26554 * 16 15 14 18 18 C 1.38771 * 118.03112 * 359.51510 * 17 16 15 19 19 N 1.31834 * 119.99897 * 0.25422 * 18 17 16 20 20 N 1.28352 * 122.27087 * 359.97438 * 19 18 17 21 21 H 1.08990 * 109.47037 * 60.00241 * 1 2 3 22 22 H 1.08997 * 109.46866 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46990 * 300.00012 * 1 2 3 24 24 H 0.96994 * 120.00164 * 179.97438 * 7 6 4 25 25 H 0.97000 * 120.00815 * 5.09317 * 14 12 2 26 26 H 1.07999 * 121.04883 * 0.03284 * 16 15 14 27 27 H 1.08000 * 120.98330 * 179.78865 * 17 16 15 28 28 H 1.07990 * 120.00149 * 180.26959 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8075 -1.1188 4.0078 10 1 1.8279 -0.4191 5.2205 11 1 1.8281 -2.5196 4.0083 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6964 -1.1191 14 7 1.7068 -0.2499 -2.4545 15 6 2.0817 -0.9656 -3.5910 16 6 1.6569 -0.5499 -4.8518 17 6 2.0522 -1.2989 -5.9494 18 6 2.8541 -2.4093 -5.7265 19 7 3.2133 -2.7272 -4.4985 20 7 2.8470 -2.0405 -3.4779 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7089 1.1614 3.4844 25 1 1.2117 0.5793 -2.5450 26 1 1.0361 0.3259 -4.9697 27 1 1.7487 -1.0238 -6.9487 28 1 3.1841 -3.0129 -6.5590 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598813377.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:21 Heat of formation + Delta-G solvation = 30.396092 kcal Electronic energy + Delta-G solvation = -14459.373654 eV Core-core repulsion = 11897.516613 eV Total energy + Delta-G solvation = -2561.857041 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93698 -38.82883 -34.82876 -33.83471 -32.93318 -31.18395 -29.89589 -25.21172 -24.75881 -24.26646 -22.31575 -19.80222 -17.87075 -16.98116 -16.65940 -16.07536 -15.52172 -15.17229 -14.47765 -13.98140 -13.86648 -13.17002 -13.02973 -12.59735 -11.72778 -11.17029 -11.02773 -10.97944 -10.73020 -10.70676 -10.30636 -10.16232 -10.00896 -9.44612 -9.06263 -8.62061 -8.40088 -8.35457 -6.07973 -4.11528 0.92415 1.15941 3.21610 3.36438 3.38276 3.45690 3.46133 3.97816 4.36957 4.44965 4.68475 4.71559 4.87509 5.10851 5.25907 5.61647 5.82513 6.10778 6.12387 6.51234 6.71803 6.76726 6.86178 7.35440 7.62526 7.79898 7.99983 8.24313 8.92047 8.98275 9.13644 9.54563 10.99729 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.059180 B = 0.006701 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.019901 B = 4177.691413 C = 4569.960519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.035 3.965 3 H 0.057 0.943 4 C -0.505 4.505 5 H 0.076 0.924 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.503 3.497 13 O -0.469 6.469 14 N -0.663 5.663 15 C 0.311 3.689 16 C -0.165 4.165 17 C -0.093 4.093 18 C -0.012 4.012 19 N -0.215 5.215 20 N -0.234 5.234 21 H 0.012 0.988 22 H 0.033 0.967 23 H 0.097 0.903 24 H 0.262 0.738 25 H 0.415 0.585 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 1.369 -15.148 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.013 3.987 3 H 0.074 0.926 4 C -0.543 4.543 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.292 3.708 13 O -0.335 6.335 14 N -0.311 5.311 15 C 0.073 3.927 16 C -0.198 4.198 17 C -0.123 4.123 18 C -0.179 4.179 19 N -0.057 5.057 20 N -0.085 5.085 21 H 0.031 0.969 22 H 0.052 0.948 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.252 0.748 26 H 0.166 0.834 27 H 0.165 0.835 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.731 -0.250 -13.720 13.742 hybrid contribution -0.878 1.115 -0.382 1.470 sum -1.610 0.864 -14.102 14.220 Atomic orbital electron populations 1.21783 0.96247 1.00101 1.01134 1.18927 0.94287 0.96946 0.88497 0.92561 1.21095 1.31358 1.13031 0.88805 0.90597 1.24935 0.94969 0.95015 0.99162 1.69847 1.36951 1.23005 1.23825 0.86462 0.79378 0.79729 0.81358 1.20075 1.21355 1.20091 1.22557 0.79258 0.85360 0.83622 1.90687 1.33028 1.24605 1.85170 1.44405 1.56430 1.25939 1.04301 1.20585 0.92275 0.92155 0.87695 1.21911 1.03347 1.02809 0.91687 1.22169 0.95795 0.94451 0.99838 1.24164 0.98671 0.97463 0.97619 1.73107 1.14732 1.21310 0.96531 1.73769 1.09830 1.03651 1.21238 0.96897 0.94780 0.88492 0.92794 0.74832 0.83422 0.83462 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.87 37.16 0.33 -2.66 15 2 C 0.03 0.84 2.64 -92.92 -0.24 0.60 15 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 15 4 C -0.50 -14.20 8.37 -34.44 -0.29 -14.49 15 5 H 0.08 2.27 6.75 -52.49 -0.35 1.91 15 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 15 7 N -0.90 -24.77 11.32 55.43 0.63 -24.14 15 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 15 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 C 0.50 11.55 7.11 -10.99 -0.08 11.48 15 13 O -0.47 -12.63 13.76 5.57 0.08 -12.55 15 14 N -0.66 -11.66 5.25 -11.31 -0.06 -11.72 15 15 C 0.31 5.35 7.51 -154.46 -1.16 4.19 15 16 C -0.16 -1.95 10.07 -39.01 -0.39 -2.34 15 17 C -0.09 -0.94 10.20 -39.24 -0.40 -1.34 15 18 C -0.01 -0.15 11.31 -17.35 -0.20 -0.34 15 19 N -0.21 -3.83 11.49 30.56 0.35 -3.48 15 20 N -0.23 -4.85 9.09 31.29 0.28 -4.56 15 21 H 0.01 0.22 7.69 -51.93 -0.40 -0.18 15 22 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 23 H 0.10 2.37 6.07 -51.93 -0.32 2.06 15 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 25 H 0.41 5.59 8.30 -40.82 -0.34 5.25 15 26 H 0.15 1.19 8.06 -52.49 -0.42 0.76 15 27 H 0.15 0.84 8.06 -52.49 -0.42 0.41 15 28 H 0.17 1.39 8.06 -52.49 -0.42 0.96 15 LS Contribution 250.71 15.07 3.78 3.78 Total: -1.00 -33.91 250.71 -5.14 -39.06 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -2.66 Total: 0.17 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.52 Total: -3.35 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.20 Total: -43.90 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.91 -5.14 -39.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598813377.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.452 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds