Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30485 * 125.97256 * 2 1 4 4 N 1.40027 * 108.88119 * 180.02562 * 3 2 1 5 5 C 1.46496 * 125.79454 * 179.82702 * 4 3 2 6 6 C 1.50693 * 109.47265 * 269.96093 * 5 4 3 7 7 H 1.08004 * 120.00431 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00042 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99935 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99943 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47167 * 89.99979 * 10 8 6 12 12 H 1.48507 * 109.46778 * 209.99820 * 10 8 6 13 13 H 1.48502 * 109.47247 * 329.99746 * 10 8 6 14 14 C 1.33828 * 108.41256 * 359.79542 * 4 3 2 15 15 C 1.38135 * 107.70189 * 359.97438 * 14 4 3 16 16 C 1.47071 * 108.62525 * 179.97438 * 15 14 4 17 17 O 1.21603 * 124.85351 * 179.97438 * 16 15 14 18 18 N 1.34472 * 110.29932 * 0.02960 * 16 15 14 19 19 C 1.46776 * 108.35800 * 359.97273 * 18 16 15 20 20 H 1.09007 * 109.46766 * 270.33529 * 1 2 3 21 21 H 1.08997 * 109.47252 * 30.32559 * 1 2 3 22 22 H 1.08997 * 109.47657 * 150.33125 * 1 2 3 23 23 H 1.09002 * 109.46773 * 29.96229 * 5 4 3 24 24 H 1.08998 * 109.47214 * 149.95790 * 5 4 3 25 25 H 0.97003 * 120.00445 * 179.97438 * 9 8 6 26 26 H 0.96997 * 125.81752 * 180.02562 * 18 16 15 27 27 H 1.09004 * 110.11877 * 240.84540 * 19 18 16 28 28 H 1.09000 * 110.17209 * 119.21915 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0560 0.0000 4 7 3.6119 0.6445 -0.0006 5 6 4.7801 1.5284 -0.0044 6 6 5.1795 1.8271 -1.4264 7 1 4.6194 1.4007 -2.2456 8 6 6.2606 2.6438 -1.6818 9 7 6.9429 3.1626 -0.6844 10 14 6.7552 3.0145 -3.4446 11 1 6.0421 4.2297 -3.9137 12 1 8.2209 3.2448 -3.5094 13 1 6.3961 1.8639 -4.3119 14 6 3.6427 -0.6934 0.0036 15 6 2.3368 -1.1437 0.0074 16 6 2.3471 -2.6144 0.0114 17 8 1.3540 -3.3162 0.0158 18 7 3.6115 -3.0721 0.0108 19 6 4.5203 -1.9196 0.0056 20 1 -0.3633 0.0060 1.0277 21 1 -0.3633 0.8870 -0.5189 22 1 -0.3634 -0.8929 -0.5086 23 1 4.5332 2.4590 0.5068 24 1 5.6073 1.0396 0.5104 25 1 7.7037 3.7369 -0.8640 26 1 3.8775 -4.0049 0.0126 27 1 5.1426 -1.9368 -0.8892 28 1 5.1467 -1.9309 0.8976 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932270.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = 51.706747 kcal Electronic energy + Delta-G solvation = -14578.358073 eV Core-core repulsion = 12017.425131 eV Total energy + Delta-G solvation = -2560.932942 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.45985 -38.64537 -35.62585 -34.11121 -32.38210 -29.77209 -28.97531 -26.77667 -26.00323 -23.13806 -21.71131 -19.87912 -18.43357 -16.94101 -16.61036 -15.86580 -15.64158 -15.25452 -14.43140 -13.93447 -13.37839 -13.15450 -13.07804 -12.74530 -12.57826 -12.01458 -11.77303 -11.47246 -11.13078 -10.97674 -10.44364 -10.34137 -9.93084 -9.48034 -9.16373 -8.78708 -8.55604 -8.01034 -6.41281 -4.50152 1.98388 2.63674 2.87176 3.13512 3.20461 3.24635 3.44252 3.83607 4.16535 4.48910 4.91965 4.96588 5.11074 5.41871 5.48533 5.60359 5.93647 5.98929 6.18546 6.24203 6.69108 6.82120 6.90500 7.15095 7.18660 7.45833 7.65105 7.67850 8.28235 8.55113 8.60074 9.17533 10.66671 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035513 B = 0.007995 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.263806 B = 3501.357145 C = 3836.300687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.126 3.874 3 N -0.284 5.284 4 N -0.278 5.278 5 C 0.248 3.752 6 C -0.544 4.544 7 H 0.066 0.934 8 C 0.069 3.931 9 N -0.888 5.888 10 Si 0.909 3.091 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.271 1.271 14 C 0.082 3.918 15 C -0.347 4.347 16 C 0.598 3.402 17 O -0.551 6.551 18 N -0.730 5.730 19 C 0.186 3.814 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.270 0.730 26 H 0.422 0.578 27 H 0.104 0.896 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 -7.568 1.607 8.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 N -0.107 5.107 4 N -0.052 5.052 5 C 0.131 3.869 6 C -0.583 4.583 7 H 0.084 0.916 8 C -0.135 4.135 9 N -0.526 5.526 10 Si 0.736 3.264 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.058 4.058 15 C -0.363 4.363 16 C 0.388 3.612 17 O -0.430 6.430 18 N -0.389 5.389 19 C 0.059 3.941 20 H 0.093 0.907 21 H 0.090 0.910 22 H 0.098 0.902 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.264 0.736 27 H 0.122 0.878 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.954 -6.292 1.665 7.148 hybrid contribution 0.744 -0.761 -0.921 1.407 sum -2.211 -7.053 0.743 7.428 Atomic orbital electron populations 1.20169 0.86678 1.03187 1.02823 1.21884 0.96521 0.88123 0.97443 1.77407 0.85967 1.21506 1.25778 1.48684 1.06538 1.02077 1.47940 1.19976 0.77776 0.89514 0.99624 1.21253 1.14346 1.31772 0.90897 0.91551 1.24921 0.95471 0.94737 0.98402 1.69906 1.19539 1.31855 1.31265 0.86307 0.77719 0.79118 0.83292 1.20145 1.20754 1.19588 1.21627 0.97801 0.87499 0.98828 1.20780 0.93407 0.94468 1.27635 1.17342 0.82634 0.86823 0.74365 1.90728 1.35993 1.64065 1.52248 1.45755 1.06706 1.08373 1.78055 1.19754 0.90189 0.79924 1.04244 0.90654 0.90951 0.90233 0.92170 0.92500 0.92005 0.73646 0.87808 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.45 36.00 0.38 -0.69 15 2 C 0.13 2.49 7.26 -82.00 -0.60 1.90 15 3 N -0.28 -6.29 12.51 33.90 0.42 -5.87 15 4 N -0.28 -6.14 3.55 -57.82 -0.21 -6.35 15 5 C 0.25 5.92 6.16 -5.20 -0.03 5.88 15 6 C -0.54 -14.14 9.39 -34.44 -0.32 -14.46 15 7 H 0.07 1.78 7.81 -52.48 -0.41 1.37 15 8 C 0.07 1.78 5.46 -17.82 -0.10 1.69 15 9 N -0.89 -23.75 13.29 55.43 0.74 -23.01 15 10 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 15 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 13 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 14 C 0.08 1.58 7.87 -81.72 -0.64 0.94 15 15 C -0.35 -6.81 7.02 -105.19 -0.74 -7.55 15 16 C 0.60 10.94 8.33 -12.81 -0.11 10.83 15 17 O -0.55 -11.44 18.05 5.27 0.10 -11.35 15 18 N -0.73 -10.06 6.44 -62.53 -0.40 -10.46 15 19 C 0.19 2.59 7.76 -5.00 -0.04 2.55 15 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.06 1.53 8.14 -51.93 -0.42 1.11 15 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 26 H 0.42 4.37 8.96 -40.82 -0.37 4.00 15 27 H 0.10 1.32 8.14 -51.93 -0.42 0.89 15 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 LS Contribution 256.47 15.07 3.86 3.86 Total: -1.00 -31.03 256.47 -5.58 -36.61 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -2.87 Total: 0.37 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.20 Total: 1.08 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.55 Total: -45.69 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.10 Total: -11.35 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.03 -5.58 -36.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932270.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.312 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds