Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30485 * 125.97256 * 2 1 4 4 N 1.40027 * 108.88119 * 180.02562 * 3 2 1 5 5 C 1.46496 * 125.79454 * 179.82702 * 4 3 2 6 6 C 1.50693 * 109.47265 * 269.96093 * 5 4 3 7 7 H 1.08004 * 120.00431 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00042 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99935 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99943 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47167 * 89.99979 * 10 8 6 12 12 H 1.48507 * 109.46778 * 209.99820 * 10 8 6 13 13 H 1.48502 * 109.47247 * 329.99746 * 10 8 6 14 14 C 1.33828 * 108.41256 * 359.79542 * 4 3 2 15 15 C 1.38135 * 107.70189 * 359.97438 * 14 4 3 16 16 C 1.47071 * 108.62525 * 179.97438 * 15 14 4 17 17 O 1.21603 * 124.85351 * 179.97438 * 16 15 14 18 18 N 1.34472 * 110.29932 * 0.02960 * 16 15 14 19 19 C 1.46776 * 108.35800 * 359.97273 * 18 16 15 20 20 H 1.09007 * 109.46766 * 270.33529 * 1 2 3 21 21 H 1.08997 * 109.47252 * 30.32559 * 1 2 3 22 22 H 1.08997 * 109.47657 * 150.33125 * 1 2 3 23 23 H 1.09002 * 109.46773 * 29.96229 * 5 4 3 24 24 H 1.08998 * 109.47214 * 149.95790 * 5 4 3 25 25 H 0.97003 * 120.00445 * 179.97438 * 9 8 6 26 26 H 0.96997 * 125.81752 * 180.02562 * 18 16 15 27 27 H 1.09004 * 110.11877 * 240.84540 * 19 18 16 28 28 H 1.09000 * 110.17209 * 119.21915 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0560 0.0000 4 7 3.6119 0.6445 -0.0006 5 6 4.7801 1.5284 -0.0044 6 6 5.1795 1.8271 -1.4264 7 1 4.6194 1.4007 -2.2456 8 6 6.2606 2.6438 -1.6818 9 7 6.9429 3.1626 -0.6844 10 14 6.7552 3.0145 -3.4446 11 1 6.0421 4.2297 -3.9137 12 1 8.2209 3.2448 -3.5094 13 1 6.3961 1.8639 -4.3119 14 6 3.6427 -0.6934 0.0036 15 6 2.3368 -1.1437 0.0074 16 6 2.3471 -2.6144 0.0114 17 8 1.3540 -3.3162 0.0158 18 7 3.6115 -3.0721 0.0108 19 6 4.5203 -1.9196 0.0056 20 1 -0.3633 0.0060 1.0277 21 1 -0.3633 0.8870 -0.5189 22 1 -0.3634 -0.8929 -0.5086 23 1 4.5332 2.4590 0.5068 24 1 5.6073 1.0396 0.5104 25 1 7.7037 3.7369 -0.8640 26 1 3.8775 -4.0049 0.0126 27 1 5.1426 -1.9368 -0.8892 28 1 5.1467 -1.9309 0.8976 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932270.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = 28.849716 kcal Electronic energy + Delta-G solvation = -14579.349228 eV Core-core repulsion = 12017.425131 eV Total energy + Delta-G solvation = -2561.924097 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.94016 -40.08932 -37.01274 -35.92057 -34.12160 -31.25231 -30.51492 -28.24426 -27.53831 -24.91588 -23.15749 -21.36106 -19.93343 -18.86308 -18.01527 -17.31255 -17.05199 -16.86213 -16.11003 -15.45026 -14.77815 -14.60417 -14.52731 -14.27974 -14.01603 -13.53209 -13.45909 -12.94800 -12.82435 -12.71508 -12.30981 -11.88701 -11.76934 -10.95463 -10.75925 -10.51679 -10.00864 -9.59834 -8.37673 -6.54327 0.52067 1.11148 1.34009 1.39023 1.42161 1.52470 2.23179 2.32744 2.38019 2.94546 3.06921 3.55860 3.67632 4.12965 4.39591 4.44954 4.59530 4.69273 4.76639 4.85185 4.94494 5.14821 5.48542 5.54878 5.70668 5.73699 5.97469 6.04103 6.54329 6.73321 7.17310 7.29194 8.69919 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035513 B = 0.007995 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.263806 B = 3501.357145 C = 3836.300687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.123 3.877 3 N -0.325 5.325 4 N -0.302 5.302 5 C 0.263 3.737 6 C -0.559 4.559 7 H 0.052 0.948 8 C 0.029 3.971 9 N -0.914 5.914 10 Si 0.970 3.030 11 H -0.277 1.277 12 H -0.271 1.271 13 H -0.268 1.268 14 C 0.082 3.918 15 C -0.371 4.371 16 C 0.596 3.404 17 O -0.581 6.581 18 N -0.703 5.703 19 C 0.187 3.813 20 H 0.094 0.906 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.275 0.725 26 H 0.442 0.558 27 H 0.127 0.873 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -8.713 1.080 9.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.043 4.043 3 N -0.147 5.147 4 N -0.077 5.077 5 C 0.145 3.855 6 C -0.597 4.597 7 H 0.071 0.929 8 C -0.173 4.173 9 N -0.552 5.552 10 Si 0.794 3.206 11 H -0.203 1.203 12 H -0.196 1.196 13 H -0.192 1.192 14 C -0.057 4.057 15 C -0.386 4.386 16 C 0.386 3.614 17 O -0.463 6.463 18 N -0.362 5.362 19 C 0.061 3.939 20 H 0.113 0.887 21 H 0.102 0.898 22 H 0.103 0.897 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.287 0.713 27 H 0.145 0.855 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.215 -7.471 1.145 7.876 hybrid contribution 0.486 -0.433 -0.720 0.971 sum -1.729 -7.904 0.425 8.102 Atomic orbital electron populations 1.20306 0.83965 1.03997 1.04300 1.22600 0.98310 0.87825 0.95610 1.77342 0.86397 1.23146 1.27834 1.48418 1.06121 1.03026 1.50091 1.19579 0.78578 0.88983 0.98362 1.21390 1.14559 1.32251 0.91508 0.92950 1.25659 0.95283 0.94295 1.02064 1.69977 1.19948 1.32234 1.33047 0.85374 0.77798 0.78686 0.78767 1.20317 1.19555 1.19238 1.22417 0.99391 0.87236 0.96702 1.21179 0.93762 0.95525 1.28176 1.17248 0.83577 0.86076 0.74545 1.90712 1.37235 1.64319 1.54045 1.45579 1.05046 1.09486 1.76132 1.20107 0.89471 0.77311 1.07001 0.88749 0.89776 0.89677 0.94901 0.91890 0.91583 0.71274 0.85530 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.00 10.45 71.24 0.74 -1.25 15 2 C 0.12 4.83 7.26 43.51 0.32 5.15 15 3 N -0.33 -14.61 12.51 -46.65 -0.58 -15.19 15 4 N -0.30 -13.43 3.55 -336.86 -1.20 -14.63 15 5 C 0.26 12.73 6.16 85.63 0.53 13.26 15 6 C -0.56 -29.18 9.39 25.60 0.24 -28.94 15 7 H 0.05 2.83 7.81 -2.91 -0.02 2.80 15 8 C 0.03 1.48 5.46 84.66 0.46 1.95 15 9 N -0.91 -48.67 13.29 21.45 0.28 -48.39 15 10 Si 0.97 40.66 29.54 68.60 2.03 42.69 15 11 H -0.28 -11.65 7.11 99.48 0.71 -10.95 15 12 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 13 H -0.27 -11.00 7.11 99.48 0.71 -10.30 15 14 C 0.08 3.04 7.87 42.26 0.33 3.38 15 15 C -0.37 -14.24 7.02 -20.23 -0.14 -14.38 15 16 C 0.60 20.78 8.33 86.61 0.72 21.50 15 17 O -0.58 -23.41 18.05 -4.04 -0.07 -23.48 15 18 N -0.70 -17.24 6.44 -470.16 -3.03 -20.27 15 19 C 0.19 4.63 7.76 85.61 0.66 5.30 15 20 H 0.09 2.43 8.14 -2.38 -0.02 2.41 15 21 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 23 H 0.03 1.74 8.14 -2.39 -0.02 1.72 15 24 H 0.06 2.92 8.14 -2.39 -0.02 2.90 15 25 H 0.27 13.70 8.31 -92.71 -0.77 12.93 15 26 H 0.44 7.56 8.96 -92.71 -0.83 6.73 15 27 H 0.13 2.73 8.14 -2.38 -0.02 2.71 15 28 H 0.14 2.52 8.14 -2.39 -0.02 2.50 15 Total: -1.00 -66.94 256.47 1.66 -65.28 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.36 Total: 8.03 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 3.87 Total: 5.96 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -4.52 Total: -98.47 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.07 Total: -23.48 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -66.94 1.66 -65.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932270.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.129 kcal (2) G-P(sol) polarization free energy of solvation -66.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds