Wall clock time and date at job start Mon Mar 30 2020 03:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 119.99964 * 2 1 4 4 H 1.48503 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47633 * 300.00327 * 3 2 1 6 6 H 1.48498 * 109.47039 * 60.00383 * 3 2 1 7 7 C 1.38814 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99680 * 196.68206 * 7 2 1 9 9 N 1.36931 * 120.00329 * 16.94896 * 7 2 1 10 10 C 1.45124 * 118.75922 * 206.56568 * 9 7 2 11 11 C 1.54801 * 109.52800 * 269.29327 * 10 9 7 12 12 O 1.38013 * 109.48461 * 292.10904 * 11 10 9 13 13 C 1.42150 * 119.43880 * 63.42428 * 12 11 10 14 14 H 1.08996 * 109.59091 * 32.72000 * 13 12 11 15 15 C 1.53004 * 109.58519 * 153.00358 * 13 12 11 16 16 F 1.39903 * 109.47003 * 299.99725 * 15 13 12 17 17 F 1.39891 * 109.47513 * 60.00112 * 15 13 12 18 18 C 1.51528 * 108.76889 * 272.78542 * 13 12 11 19 19 C 1.47511 * 118.75548 * 26.29538 * 9 7 2 20 20 H 0.97000 * 120.00455 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.45958 * 29.30627 * 10 9 7 22 22 H 1.09002 * 109.46283 * 149.27090 * 10 9 7 23 23 H 1.08999 * 109.47322 * 52.11367 * 11 10 9 24 24 H 1.09007 * 109.47073 * 172.10442 * 11 10 9 25 25 H 1.09000 * 109.46785 * 180.02562 * 15 13 12 26 26 H 1.08999 * 109.45564 * 211.43025 * 18 13 12 27 27 H 1.09001 * 109.45730 * 331.38484 * 18 13 12 28 28 H 1.08995 * 109.16676 * 258.76939 * 19 9 7 29 29 H 1.08999 * 109.16303 * 17.97332 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0561 -1.2220 0.2680 9 7 1.3701 -2.3621 -0.3467 10 6 1.8642 -3.6182 0.1866 11 6 2.9096 -4.2175 -0.7852 12 8 2.2840 -4.6040 -1.9531 13 6 1.6601 -3.6217 -2.7696 14 1 2.2105 -2.6837 -2.6980 15 6 1.6448 -4.0978 -4.2236 16 9 2.9579 -4.3007 -4.6616 17 9 0.9323 -5.2983 -4.3139 18 6 0.2383 -3.4181 -2.2868 19 6 0.2008 -2.2872 -1.2429 20 1 -0.4851 0.8400 0.0004 21 1 2.3289 -3.4430 1.1569 22 1 1.0342 -4.3152 0.3021 23 1 3.6681 -3.4678 -1.0103 24 1 3.3815 -5.0840 -0.3219 25 1 1.1665 -3.3431 -4.8479 26 1 -0.3976 -3.1535 -3.1317 27 1 -0.1264 -4.3394 -1.8326 28 1 -0.7101 -2.3721 -0.6504 29 1 0.2045 -1.3257 -1.7562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601976972.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:00 Heat of formation + Delta-G solvation = -143.974274 kcal Electronic energy + Delta-G solvation = -16179.838030 eV Core-core repulsion = 13159.730536 eV Total energy + Delta-G solvation = -3020.107494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.83795 -47.87303 -40.38052 -36.94395 -34.34036 -33.40088 -29.19795 -29.13067 -25.83861 -24.89967 -22.33729 -21.49901 -18.97730 -18.50184 -18.23579 -17.81890 -16.94625 -16.84093 -16.29035 -15.81175 -15.23233 -14.79846 -14.75534 -14.25521 -14.11038 -13.70603 -13.20996 -13.14878 -12.97756 -12.81785 -12.46842 -12.17600 -12.07163 -11.83212 -11.51050 -11.39718 -10.59474 -10.36685 -8.73468 -7.91243 -5.38153 1.44697 1.48142 1.57594 2.47552 2.51555 2.95533 3.23814 3.31402 3.53773 3.64161 4.04897 4.21221 4.33862 4.49401 4.51453 4.53816 4.73782 4.83424 5.01026 5.04562 5.16094 5.39700 5.59906 5.70060 6.35011 6.58012 7.12811 7.85070 8.26772 9.14747 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.036938 B = 0.009378 C = 0.009118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.850049 B = 2985.081213 C = 3070.032445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.043 4.043 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.272 4.272 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.111 3.889 11 C 0.060 3.940 12 O -0.392 6.392 13 C 0.064 3.936 14 H 0.079 0.921 15 C 0.271 3.729 16 F -0.215 7.215 17 F -0.209 7.209 18 C -0.152 4.152 19 C 0.188 3.812 20 H 0.251 0.749 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.029 0.971 24 H 0.116 0.884 25 H 0.163 0.837 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.003 0.997 29 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -6.257 -7.022 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.402 4.402 8 H 0.084 0.916 9 N -0.334 5.334 10 C -0.016 4.016 11 C -0.019 4.019 12 O -0.310 6.310 13 C 0.005 3.995 14 H 0.097 0.903 15 C 0.218 3.782 16 F -0.196 7.196 17 F -0.190 7.190 18 C -0.191 4.191 19 C 0.063 3.937 20 H 0.060 0.940 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.134 0.866 25 H 0.180 0.820 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.021 0.979 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.459 -6.358 -7.074 9.824 hybrid contribution 0.215 1.227 0.492 1.339 sum 2.674 -5.131 -6.581 8.763 Atomic orbital electron populations 1.70213 1.06538 1.25911 1.55138 1.25744 0.95984 1.01321 1.00808 0.85279 0.78616 0.80078 0.76886 1.19322 1.21346 1.22072 1.19531 0.92982 0.86160 1.41562 0.91635 1.44147 1.33872 1.02324 1.53100 1.21751 0.96252 0.87610 0.96001 1.22803 0.94053 0.99883 0.85155 1.86151 1.72765 1.36568 1.35552 1.22728 0.95422 0.92691 0.88627 0.90318 1.22631 0.75442 0.84719 0.95437 1.92940 1.39796 1.95987 1.90907 1.92943 1.78155 1.50687 1.97246 1.22569 0.95594 1.00366 1.00613 1.20806 0.87831 0.95577 0.89516 0.93959 0.92810 0.93820 0.95267 0.86621 0.81969 0.88427 0.91516 0.97896 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.11 11.11 21.65 0.24 -52.87 15 2 C -0.04 -2.29 4.84 84.86 0.41 -1.88 15 3 Si 0.96 43.39 29.59 68.60 2.03 45.42 15 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 15 6 H -0.29 -13.35 7.11 99.48 0.71 -12.65 15 7 C -0.27 -14.41 9.45 84.03 0.79 -13.62 15 8 H 0.07 3.42 7.88 -2.91 -0.02 3.40 15 9 N -0.61 -29.55 2.22 -697.42 -1.55 -31.10 15 10 C 0.11 4.53 5.82 87.25 0.51 5.04 15 11 C 0.06 2.14 6.82 72.60 0.49 2.64 15 12 O -0.39 -14.45 9.39 -117.84 -1.11 -15.56 15 13 C 0.06 2.20 2.37 30.11 0.07 2.27 15 14 H 0.08 3.02 7.42 -2.39 -0.02 3.00 15 15 C 0.27 7.55 4.85 71.98 0.35 7.89 15 16 F -0.21 -6.67 17.28 44.97 0.78 -5.89 15 17 F -0.21 -6.32 16.98 44.97 0.76 -5.56 15 18 C -0.15 -5.38 5.03 30.43 0.15 -5.23 15 19 C 0.19 8.64 4.75 86.51 0.41 9.05 15 20 H 0.25 13.85 8.31 -92.71 -0.77 13.08 15 21 H 0.05 2.18 7.98 -2.39 -0.02 2.16 15 22 H 0.04 1.75 8.11 -2.39 -0.02 1.73 15 23 H 0.03 1.10 8.14 -2.39 -0.02 1.08 15 24 H 0.12 3.36 8.14 -2.38 -0.02 3.34 15 25 H 0.16 3.10 8.12 -2.39 -0.02 3.08 15 26 H 0.10 2.82 7.78 -2.39 -0.02 2.80 15 27 H 0.07 2.40 8.01 -2.39 -0.02 2.38 15 28 H 0.00 0.15 8.04 -2.39 -0.02 0.13 15 29 H 0.05 2.59 6.43 -2.39 -0.02 2.58 15 Total: -1.00 -61.76 246.18 5.49 -56.27 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.14 Total: 3.13 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 3.19 Total: 6.16 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -1.31 Total: -83.97 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.11 Total: -15.56 kcal Atomic # 9 Polarization: -12.99 SS G_CDS: 1.54 Total: -11.45 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -61.76 5.49 -56.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601976972.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.706 kcal (2) G-P(sol) polarization free energy of solvation -61.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds