Wall clock time and date at job start Mon Mar 30 2020 03:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99976 * 2 1 4 4 H 1.48495 * 109.47100 * 275.54253 * 3 2 1 5 5 H 1.48510 * 109.46981 * 35.53890 * 3 2 1 6 6 H 1.48495 * 109.47287 * 155.54054 * 3 2 1 7 7 C 1.38811 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99764 * 336.75473 * 7 2 1 9 9 N 1.36930 * 120.00158 * 156.75517 * 7 2 1 10 10 C 1.43756 * 120.43017 * 320.52905 * 9 7 2 11 11 C 1.54417 * 115.48604 * 267.80890 * 10 9 7 12 12 O 1.44953 * 110.76866 * 318.58201 * 11 10 9 13 13 C 1.39714 * 115.12880 * 320.84605 * 12 11 10 14 14 H 1.09003 * 110.12212 * 338.96693 * 13 12 11 15 15 C 1.53001 * 110.12443 * 217.36839 * 13 12 11 16 16 F 1.39899 * 109.46620 * 65.00051 * 15 13 12 17 17 F 1.39905 * 109.47000 * 184.99443 * 15 13 12 18 18 C 1.52685 * 106.08626 * 98.22353 * 13 12 11 19 19 C 1.46916 * 113.62269 * 271.71924 * 18 13 12 20 20 H 0.96999 * 119.99703 * 359.97438 * 1 2 3 21 21 H 1.09006 * 108.27831 * 146.25002 * 10 9 7 22 22 H 1.08995 * 108.28003 * 29.37252 * 10 9 7 23 23 H 1.09000 * 109.21842 * 198.25126 * 11 10 9 24 24 H 1.09005 * 109.21772 * 78.91820 * 11 10 9 25 25 H 1.08994 * 109.47224 * 304.99848 * 15 13 12 26 26 H 1.08996 * 108.65155 * 32.79240 * 18 13 12 27 27 H 1.09007 * 108.65066 * 150.65069 * 18 13 12 28 28 H 1.09004 * 109.87271 * 177.44647 * 19 18 13 29 29 H 1.09001 * 109.87545 * 298.42324 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3806 2.1140 -1.3935 5 1 1.5110 2.6161 0.8139 6 1 3.6014 1.4093 0.5797 7 6 2.0103 -1.2021 -0.0005 8 1 1.5361 -2.0997 0.3682 9 7 3.2963 -1.2500 -0.4686 10 6 3.6771 -0.4931 -1.6299 11 6 3.5665 -1.2413 -2.9762 12 8 4.0415 -2.6047 -2.8471 13 6 5.1702 -2.7658 -2.0397 14 1 5.7058 -1.8206 -1.9509 15 6 6.0897 -3.8379 -2.6281 16 9 6.5850 -3.4014 -3.8615 17 9 7.1562 -4.0691 -1.7527 18 6 4.6531 -3.2096 -0.6733 19 6 4.3251 -2.0928 0.2231 20 1 -0.4849 0.8401 0.0004 21 1 4.7100 -0.1686 -1.5029 22 1 3.0483 0.3957 -1.6800 23 1 4.1647 -0.7224 -3.7252 24 1 2.5244 -1.2530 -3.2956 25 1 5.5279 -4.7613 -2.7683 26 1 3.7579 -3.8142 -0.8189 27 1 5.4140 -3.8275 -0.1965 28 1 3.9210 -2.4761 1.1601 29 1 5.2189 -1.5009 0.4201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601976973.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:02 Heat of formation + Delta-G solvation = -138.503000 kcal Electronic energy + Delta-G solvation = -16123.918200 eV Core-core repulsion = 13104.047958 eV Total energy + Delta-G solvation = -3019.870242 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.96130 -47.97401 -40.47891 -36.99108 -34.61231 -33.52397 -29.71544 -29.44107 -25.70881 -24.93654 -22.23674 -21.94879 -19.21510 -18.43629 -18.33326 -18.05518 -17.19520 -16.88153 -16.14328 -15.72398 -15.46722 -14.86399 -14.67174 -14.51409 -14.39228 -14.00624 -13.76438 -13.65467 -13.33206 -12.64870 -12.42013 -12.25898 -12.03990 -11.77560 -11.66927 -11.38043 -10.70568 -10.45431 -8.77296 -8.23280 -5.64250 1.28423 1.40498 1.51378 2.26821 2.39121 2.88752 3.11415 3.24289 3.42818 3.52633 3.87974 4.02618 4.11562 4.23590 4.36125 4.46847 4.58759 4.79075 4.84275 4.85150 5.04205 5.08335 5.39081 5.91620 6.13087 6.24533 6.94514 7.56620 8.02250 8.96245 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.049030 B = 0.009083 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.937409 B = 3082.069929 C = 3203.022354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.015 4.015 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.306 1.306 6 H -0.259 1.259 7 C -0.260 4.260 8 H 0.038 0.962 9 N -0.610 5.610 10 C 0.104 3.896 11 C 0.046 3.954 12 O -0.382 6.382 13 C 0.053 3.947 14 H 0.081 0.919 15 C 0.270 3.730 16 F -0.212 7.212 17 F -0.200 7.200 18 C -0.148 4.148 19 C 0.135 3.865 20 H 0.264 0.736 21 H 0.058 0.942 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.141 0.859 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.351 -4.614 -4.715 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.212 4.212 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.234 1.234 6 H -0.183 1.183 7 C -0.390 4.390 8 H 0.056 0.944 9 N -0.334 5.334 10 C -0.024 4.024 11 C -0.033 4.033 12 O -0.301 6.301 13 C -0.007 4.007 14 H 0.099 0.901 15 C 0.217 3.783 16 F -0.193 7.193 17 F -0.181 7.181 18 C -0.187 4.187 19 C 0.013 3.987 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.158 0.842 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.163 -4.679 -4.773 14.763 hybrid contribution -0.133 1.113 0.172 1.134 sum 13.030 -3.566 -4.601 14.271 Atomic orbital electron populations 1.70016 1.07772 1.27636 1.53238 1.26134 0.95580 1.01195 0.98284 0.85883 0.79492 0.80169 0.77615 1.19832 1.23409 1.18313 1.18581 0.88450 0.92993 1.39001 0.94448 1.44301 1.07305 1.55592 1.26201 1.21469 0.98890 0.94505 0.87490 1.23980 0.99621 0.81653 0.98039 1.87500 1.44063 1.29043 1.69470 1.22359 0.88324 0.98709 0.91318 0.90142 1.21970 0.82813 1.00141 0.73419 1.92952 1.89395 1.91834 1.45112 1.92966 1.59699 1.95531 1.69930 1.21427 1.02004 1.00363 0.94947 1.20675 0.91298 0.91691 0.95065 0.92654 0.92379 0.93977 0.90290 0.90648 0.84205 0.91907 0.88789 0.91182 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.97 21.65 0.30 -57.53 15 2 C -0.01 -0.84 5.26 84.86 0.45 -0.39 15 3 Si 0.94 44.52 25.22 68.60 1.73 46.25 15 4 H -0.27 -12.12 6.73 99.48 0.67 -11.45 15 5 H -0.31 -14.73 7.11 99.48 0.71 -14.02 15 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 15 7 C -0.26 -14.44 9.91 84.03 0.83 -13.60 15 8 H 0.04 2.33 8.06 -2.91 -0.02 2.30 15 9 N -0.61 -27.57 2.28 -707.70 -1.61 -29.18 15 10 C 0.10 4.17 4.14 87.37 0.36 4.53 15 11 C 0.05 1.63 7.28 72.46 0.53 2.15 15 12 O -0.38 -13.39 9.84 -137.95 -1.36 -14.75 15 13 C 0.05 1.56 2.37 30.49 0.07 1.63 15 14 H 0.08 2.34 6.35 -2.39 -0.02 2.32 15 15 C 0.27 6.56 5.02 71.98 0.36 6.92 15 16 F -0.21 -5.75 17.33 44.97 0.78 -4.97 15 17 F -0.20 -4.84 16.47 44.97 0.74 -4.10 15 18 C -0.15 -4.53 4.91 28.60 0.14 -4.39 15 19 C 0.14 4.88 6.18 83.83 0.52 5.39 15 20 H 0.26 15.32 8.31 -92.71 -0.77 14.54 15 21 H 0.06 2.03 7.08 -2.38 -0.02 2.01 15 22 H 0.04 1.86 3.51 -2.39 -0.01 1.85 15 23 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.08 2.93 8.14 -2.38 -0.02 2.91 15 25 H 0.14 2.76 8.14 -2.39 -0.02 2.74 15 26 H 0.06 2.18 7.96 -2.39 -0.02 2.16 15 27 H 0.09 2.29 7.15 -2.38 -0.02 2.27 15 28 H 0.07 2.57 7.98 -2.38 -0.02 2.55 15 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 Total: -1.00 -63.76 240.10 4.96 -58.80 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.12 Total: 3.23 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 3.26 Total: 2.25 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -1.31 Total: -86.72 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.36 Total: -14.75 kcal Atomic # 9 Polarization: -10.59 SS G_CDS: 1.52 Total: -9.07 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.73 Total: 46.25 kcal Total: -63.76 4.96 -58.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601976973.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.704 kcal (2) G-P(sol) polarization free energy of solvation -63.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds