Wall clock time and date at job start Mon Mar 30 2020 03:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48492 * 109.47165 * 239.99791 * 3 2 1 5 5 H 1.48499 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47235 * 119.99423 * 3 2 1 7 7 C 1.39900 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99697 * 175.54021 * 7 2 1 9 9 C 1.41155 * 119.99768 * 355.54852 * 7 2 1 10 10 C 1.40866 * 120.16540 * 35.03823 * 9 7 2 11 11 C 1.36374 * 119.83041 * 180.23081 * 10 9 7 12 12 C 1.39492 * 120.16381 * 359.49988 * 11 10 9 13 13 N 1.39242 * 119.82892 * 180.25820 * 12 11 10 14 14 C 1.34773 * 120.00170 * 324.70152 * 13 12 11 15 15 O 1.21586 * 119.99937 * 4.29007 * 14 13 12 16 16 N 1.34772 * 120.00048 * 184.29426 * 14 13 12 17 17 N 1.36596 * 120.00134 * 359.97438 * 16 14 13 18 18 C 1.39475 * 120.33152 * 0.22825 * 12 11 10 19 19 C 1.36379 * 120.17362 * 0.02918 * 18 12 11 20 20 H 0.97002 * 119.99911 * 0.02562 * 1 2 3 21 21 H 1.08004 * 120.08744 * 359.97438 * 10 9 7 22 22 H 1.07995 * 119.91926 * 179.77452 * 11 10 9 23 23 H 0.97004 * 119.99926 * 144.70717 * 13 12 11 24 24 H 0.96999 * 120.00472 * 179.97438 * 16 14 13 25 25 H 1.00904 * 111.00522 * 179.97438 * 17 16 14 26 26 H 1.00896 * 111.00264 * 303.95639 * 17 16 14 27 27 H 1.08006 * 119.91222 * 180.02562 * 18 12 11 28 28 H 1.07997 * 120.08331 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0966 1.6963 -1.2124 5 1 1.2779 2.7464 -0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0722 9 6 1.3056 -2.4321 0.0960 10 6 0.0440 -2.5722 -0.5148 11 6 -0.6310 -3.7529 -0.4143 12 6 -0.0705 -4.8236 0.2823 13 7 -0.7634 -6.0277 0.3759 14 6 -2.1074 -6.0258 0.4768 15 8 -2.7207 -4.9782 0.4076 16 7 -2.7715 -7.1850 0.6545 17 7 -2.0825 -8.3619 0.7318 18 6 1.1807 -4.6942 0.8848 19 6 1.8654 -3.5180 0.7973 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3895 -1.7453 -1.0578 22 1 -1.5999 -3.8607 -0.8789 23 1 -0.2788 -6.8680 0.3687 24 1 -3.7387 -7.1836 0.7274 25 1 -2.7104 -9.1405 0.8653 26 1 -1.5061 -8.4978 -0.0851 27 1 1.6085 -5.5278 1.4221 28 1 2.8343 -3.4196 1.2640 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606262890.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:53 Heat of formation + Delta-G solvation = 21.651480 kcal Electronic energy + Delta-G solvation = -14370.807066 eV Core-core repulsion = 11808.570830 eV Total energy + Delta-G solvation = -2562.236236 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.96054 -37.48760 -35.90868 -34.34488 -32.70176 -29.49177 -29.08143 -28.25996 -24.84966 -21.74854 -21.12280 -19.75366 -18.30636 -17.84531 -17.20687 -15.87662 -15.40875 -15.02283 -14.35106 -14.07244 -13.81238 -13.04091 -12.63164 -12.04786 -11.75345 -11.39113 -11.26737 -11.06194 -10.88748 -10.44023 -10.00677 -9.82603 -9.58872 -9.02714 -8.71049 -8.18111 -7.44699 -6.78774 -6.52275 -4.25977 2.73060 2.98779 3.11985 3.14629 3.16184 3.22339 3.65228 4.03003 4.08401 4.79933 5.38114 5.72935 6.20740 6.24003 6.46387 6.87846 6.92687 7.12006 7.23289 7.32077 7.36031 7.50223 7.72401 7.95410 8.08006 8.16237 8.37709 8.60951 8.74634 8.99422 9.00685 9.15130 10.38910 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066262 B = 0.006442 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.462900 B = 4345.742890 C = 4688.604703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.099 3.901 10 C -0.143 4.143 11 C -0.096 4.096 12 C 0.022 3.978 13 N -0.657 5.657 14 C 0.705 3.295 15 O -0.574 6.574 16 N -0.599 5.599 17 N -0.609 5.609 18 C -0.114 4.114 19 C -0.203 4.203 20 H 0.278 0.722 21 H 0.130 0.870 22 H 0.108 0.892 23 H 0.396 0.604 24 H 0.410 0.590 25 H 0.358 0.642 26 H 0.333 0.667 27 H 0.091 0.909 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -11.548 -0.665 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.096 3.904 10 C -0.163 4.163 11 C -0.116 4.116 12 C -0.071 4.071 13 N -0.304 5.304 14 C 0.405 3.595 15 O -0.448 6.448 16 N -0.353 5.353 17 N -0.238 5.238 18 C -0.135 4.135 19 C -0.223 4.223 20 H 0.089 0.911 21 H 0.148 0.852 22 H 0.125 0.875 23 H 0.230 0.770 24 H 0.250 0.750 25 H 0.171 0.829 26 H 0.147 0.853 27 H 0.109 0.891 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.218 -10.220 -0.080 10.458 hybrid contribution -0.396 -0.247 -0.634 0.787 sum -2.614 -10.467 -0.714 10.812 Atomic orbital electron populations 1.69788 1.07214 1.28755 1.37876 1.25880 0.94920 1.01085 0.92719 0.86268 0.79758 0.80324 0.79643 1.19132 1.20493 1.19177 1.19428 0.94575 0.90256 1.45349 0.90736 1.17707 0.92285 0.91851 0.88536 1.21297 0.96972 0.96020 1.02017 1.20671 0.98983 0.93379 0.98596 1.17132 0.94655 0.86462 1.08802 1.42021 1.04228 1.08680 1.75462 1.15773 0.82729 0.82404 0.78627 1.90997 1.67177 1.28435 1.58217 1.44337 1.08245 1.01207 1.81550 1.60100 1.22817 0.96713 1.44160 1.20065 0.95105 0.97577 1.00748 1.20682 1.01112 0.94571 1.05941 0.91097 0.85237 0.87450 0.76981 0.75033 0.82877 0.85293 0.89089 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.08 10.61 55.55 0.59 -21.49 15 2 C 0.07 1.81 5.42 -17.34 -0.09 1.71 15 3 Si 0.92 19.49 29.56 -169.99 -5.03 14.47 15 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 6 H -0.27 -5.63 7.11 56.52 0.40 -5.22 15 7 C -0.47 -12.66 9.02 -37.85 -0.34 -13.00 15 8 H 0.07 1.92 7.85 -52.49 -0.41 1.51 15 9 C 0.10 2.71 5.55 -106.80 -0.59 2.11 15 10 C -0.14 -3.94 8.61 -39.26 -0.34 -4.27 15 11 C -0.10 -2.47 8.61 -39.79 -0.34 -2.81 15 12 C 0.02 0.51 6.31 -83.57 -0.53 -0.01 15 13 N -0.66 -12.25 5.24 -14.10 -0.07 -12.32 15 14 C 0.70 13.29 8.46 -86.93 -0.74 12.56 15 15 O -0.57 -13.54 14.60 5.29 0.08 -13.47 15 16 N -0.60 -7.76 6.47 27.63 0.18 -7.58 15 17 N -0.61 -5.52 9.64 60.35 0.58 -4.94 15 18 C -0.11 -2.59 9.90 -39.79 -0.39 -2.98 15 19 C -0.20 -5.02 9.74 -39.26 -0.38 -5.41 15 20 H 0.28 6.99 8.30 -40.82 -0.34 6.65 15 21 H 0.13 3.72 6.15 -52.48 -0.32 3.39 15 22 H 0.11 2.79 6.22 -52.49 -0.33 2.46 15 23 H 0.40 5.95 7.44 -40.82 -0.30 5.64 15 24 H 0.41 4.52 8.93 -185.16 -1.65 2.87 15 25 H 0.36 1.99 9.21 -181.36 -1.67 0.32 15 26 H 0.33 2.62 8.44 -181.37 -1.53 1.09 15 27 H 0.09 1.76 8.06 -52.48 -0.42 1.34 15 28 H 0.10 2.21 8.06 -52.49 -0.42 1.79 15 LS Contribution 247.71 15.07 3.73 3.73 Total: -1.00 -32.57 247.71 -9.88 -42.45 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.20 Total: 11.25 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.75 Total: -12.10 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 1.28 Total: -46.34 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.57 -9.88 -42.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606262890.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.105 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds