Wall clock time and date at job start Mon Mar 30 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48492 * 109.47165 * 239.99791 * 3 2 1 5 5 H 1.48499 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47235 * 119.99423 * 3 2 1 7 7 C 1.39900 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99697 * 175.54021 * 7 2 1 9 9 C 1.41155 * 119.99768 * 355.54852 * 7 2 1 10 10 C 1.40866 * 120.16540 * 35.03823 * 9 7 2 11 11 C 1.36374 * 119.83041 * 180.23081 * 10 9 7 12 12 C 1.39492 * 120.16381 * 359.49988 * 11 10 9 13 13 N 1.39242 * 119.82892 * 180.25820 * 12 11 10 14 14 C 1.34773 * 120.00170 * 324.70152 * 13 12 11 15 15 O 1.21586 * 119.99937 * 4.29007 * 14 13 12 16 16 N 1.34772 * 120.00048 * 184.29426 * 14 13 12 17 17 N 1.36596 * 120.00134 * 359.97438 * 16 14 13 18 18 C 1.39475 * 120.33152 * 0.22825 * 12 11 10 19 19 C 1.36379 * 120.17362 * 0.02918 * 18 12 11 20 20 H 0.97002 * 119.99911 * 0.02562 * 1 2 3 21 21 H 1.08004 * 120.08744 * 359.97438 * 10 9 7 22 22 H 1.07995 * 119.91926 * 179.77452 * 11 10 9 23 23 H 0.97004 * 119.99926 * 144.70717 * 13 12 11 24 24 H 0.96999 * 120.00472 * 179.97438 * 16 14 13 25 25 H 1.00904 * 111.00522 * 179.97438 * 17 16 14 26 26 H 1.00896 * 111.00264 * 303.95639 * 17 16 14 27 27 H 1.08006 * 119.91222 * 180.02562 * 18 12 11 28 28 H 1.07997 * 120.08331 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0966 1.6963 -1.2124 5 1 1.2779 2.7464 -0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0722 9 6 1.3056 -2.4321 0.0960 10 6 0.0440 -2.5722 -0.5148 11 6 -0.6310 -3.7529 -0.4143 12 6 -0.0705 -4.8236 0.2823 13 7 -0.7634 -6.0277 0.3759 14 6 -2.1074 -6.0258 0.4768 15 8 -2.7207 -4.9782 0.4076 16 7 -2.7715 -7.1850 0.6545 17 7 -2.0825 -8.3619 0.7318 18 6 1.1807 -4.6942 0.8848 19 6 1.8654 -3.5180 0.7973 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3895 -1.7453 -1.0578 22 1 -1.5999 -3.8607 -0.8789 23 1 -0.2788 -6.8680 0.3687 24 1 -3.7387 -7.1836 0.7274 25 1 -2.7104 -9.1405 0.8653 26 1 -1.5061 -8.4978 -0.0851 27 1 1.6085 -5.5278 1.4221 28 1 2.8343 -3.4196 1.2640 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606262890.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:52 Heat of formation + Delta-G solvation = -2.891791 kcal Electronic energy + Delta-G solvation = -14371.871342 eV Core-core repulsion = 11808.570830 eV Total energy + Delta-G solvation = -2563.300512 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.47049 -39.26807 -37.17842 -36.14397 -34.52793 -31.41680 -30.82156 -29.52942 -26.72326 -23.46327 -23.00041 -21.41355 -19.71165 -19.17721 -18.99114 -17.49586 -16.99085 -16.59960 -15.74974 -15.66771 -15.41656 -14.85703 -14.48601 -13.94704 -13.64706 -13.28392 -12.82860 -12.67199 -12.32364 -12.27286 -11.81437 -11.69731 -11.36699 -10.93244 -10.53755 -9.42130 -9.23260 -8.63888 -8.45962 -6.28956 0.88914 1.16682 1.40550 1.50650 1.53913 1.75598 2.14964 2.26592 2.80269 2.88103 3.72920 4.45655 4.49766 4.53680 5.02882 5.14768 5.19379 5.36193 5.39396 5.46231 5.74443 5.85279 6.11704 6.18256 6.29538 6.40532 6.45472 6.74673 6.99725 7.06507 7.31728 7.67604 8.47037 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066262 B = 0.006442 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.462900 B = 4345.742890 C = 4688.604703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.022 3.978 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.065 3.935 10 C -0.167 4.167 11 C -0.111 4.111 12 C 0.037 3.963 13 N -0.648 5.648 14 C 0.699 3.301 15 O -0.628 6.628 16 N -0.577 5.577 17 N -0.608 5.608 18 C -0.109 4.109 19 C -0.207 4.207 20 H 0.281 0.719 21 H 0.105 0.895 22 H 0.097 0.903 23 H 0.417 0.583 24 H 0.421 0.579 25 H 0.382 0.618 26 H 0.347 0.653 27 H 0.135 0.865 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 -13.372 0.146 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.190 4.190 3 Si 0.812 3.188 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.529 4.529 8 H 0.098 0.902 9 C 0.062 3.938 10 C -0.187 4.187 11 C -0.131 4.131 12 C -0.057 4.057 13 N -0.297 5.297 14 C 0.398 3.602 15 O -0.506 6.506 16 N -0.329 5.329 17 N -0.242 5.242 18 C -0.129 4.129 19 C -0.227 4.227 20 H 0.092 0.908 21 H 0.122 0.878 22 H 0.115 0.885 23 H 0.255 0.745 24 H 0.264 0.736 25 H 0.199 0.801 26 H 0.162 0.838 27 H 0.153 0.847 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.366 -12.166 0.734 12.264 hybrid contribution -0.747 0.054 -0.867 1.146 sum -2.113 -12.112 -0.133 12.296 Atomic orbital electron populations 1.69916 1.08939 1.29804 1.39010 1.26853 0.95686 1.04729 0.91683 0.85119 0.78331 0.75319 0.80041 1.18131 1.19900 1.18380 1.19741 0.95017 0.91146 1.47006 0.90151 1.18048 0.92663 0.93266 0.89794 1.21168 0.97973 0.96218 1.03356 1.20683 0.98689 0.94087 0.99637 1.17175 0.94799 0.87133 1.06627 1.41759 1.04362 1.08088 1.75460 1.15936 0.82565 0.83163 0.78496 1.90974 1.68166 1.31104 1.60401 1.43951 1.08659 1.01092 1.79205 1.60020 1.23275 0.95832 1.45055 1.20414 0.94420 0.98123 0.99922 1.20956 1.01886 0.94583 1.05295 0.90814 0.87757 0.88514 0.74494 0.73643 0.80110 0.83798 0.84714 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.19 10.61 21.82 0.23 -47.95 15 2 C 0.02 1.15 5.42 85.24 0.46 1.61 15 3 Si 0.99 40.39 29.56 68.60 2.03 42.42 15 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 7 C -0.50 -27.75 9.02 23.39 0.21 -27.54 15 8 H 0.08 4.20 7.85 -2.91 -0.02 4.18 15 9 C 0.06 3.63 5.55 -21.28 -0.12 3.51 15 10 C -0.17 -9.61 8.61 22.48 0.19 -9.41 15 11 C -0.11 -5.84 8.61 22.14 0.19 -5.65 15 12 C 0.04 1.66 6.31 38.57 0.24 1.91 15 13 N -0.65 -22.66 5.24 -316.78 -1.66 -24.32 15 14 C 0.70 25.29 8.46 179.06 1.51 26.80 15 15 O -0.63 -29.80 14.60 -3.99 -0.06 -29.86 15 16 N -0.58 -13.37 6.47 -184.75 -1.20 -14.56 15 17 N -0.61 -8.68 9.64 37.02 0.36 -8.32 15 18 C -0.11 -4.65 9.90 22.13 0.22 -4.43 15 19 C -0.21 -10.09 9.74 22.48 0.22 -9.87 15 20 H 0.28 14.70 8.30 -92.71 -0.77 13.93 15 21 H 0.10 6.42 6.15 -2.91 -0.02 6.40 15 22 H 0.10 5.25 6.22 -2.91 -0.02 5.23 15 23 H 0.42 10.97 7.44 -92.71 -0.69 10.28 15 24 H 0.42 8.23 8.93 -215.50 -1.92 6.30 15 25 H 0.38 2.64 9.21 -210.55 -1.94 0.70 15 26 H 0.35 4.03 8.44 -210.56 -1.78 2.26 15 27 H 0.14 4.58 8.06 -2.91 -0.02 4.56 15 28 H 0.11 5.05 8.06 -2.91 -0.02 5.02 15 Total: -1.00 -73.38 247.71 -2.25 -75.63 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -5.08 Total: 30.03 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 3.13 Total: -23.07 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -2.27 Total: -95.15 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.06 Total: -29.86 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -73.38 -2.25 -75.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606262890.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.741 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds