Wall clock time and date at job start Mon Mar 30 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86801 * 119.99847 * 2 1 4 4 H 1.48500 * 109.47325 * 269.99814 * 3 2 1 5 5 H 1.48505 * 109.47172 * 30.00150 * 3 2 1 6 6 H 1.48508 * 109.46908 * 149.99599 * 3 2 1 7 7 C 1.40051 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99842 * 359.97438 * 7 2 1 10 10 O 1.21681 * 120.00107 * 0.02562 * 9 7 2 11 11 N 1.34776 * 119.99777 * 179.97438 * 9 7 2 12 12 C 1.47579 * 134.49119 * 180.02562 * 11 9 7 13 13 C 1.53952 * 86.11714 * 155.36700 * 12 11 9 14 14 N 1.46495 * 113.74304 * 137.95605 * 13 12 11 15 15 C 1.34957 * 126.03329 * 276.89706 * 14 13 12 16 16 C 1.35317 * 107.74055 * 179.97438 * 15 14 13 17 17 C 1.39868 * 107.92640 * 0.02562 * 16 15 14 18 18 N 1.30844 * 108.19764 * 359.97438 * 17 16 15 19 19 C 1.47813 * 134.45882 * 359.87963 * 11 9 7 20 20 H 0.96998 * 120.00224 * 0.02562 * 1 2 3 21 21 H 1.08994 * 113.77134 * 41.06927 * 12 11 9 22 22 H 1.09007 * 113.87386 * 269.67799 * 12 11 9 23 23 H 1.08999 * 113.73704 * 269.15575 * 13 12 11 24 24 H 1.07995 * 126.12756 * 0.02562 * 15 14 13 25 25 H 1.08004 * 126.03278 * 180.02562 * 16 15 14 26 26 H 1.07995 * 125.89923 * 180.25722 * 17 16 15 27 27 H 1.09005 * 113.76915 * 90.36959 * 19 11 9 28 28 H 1.09002 * 113.83181 * 318.91319 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4381 2.6527 0.7001 6 1 3.5382 1.4402 0.7002 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0017 12 6 1.5544 -5.0697 0.0021 13 6 2.9274 -5.3427 -0.6385 14 7 3.6079 -6.5210 -0.0956 15 6 4.3497 -6.5604 1.0311 16 6 4.8008 -7.8270 1.1836 17 6 4.3188 -8.5875 0.1133 18 7 3.6034 -7.8056 -0.6541 19 6 3.3803 -4.0167 -0.0015 20 1 -0.4850 0.8400 -0.0004 21 1 0.7121 -5.2922 -0.6528 22 1 1.4423 -5.4961 0.9991 23 1 2.9147 -5.3239 -1.7283 24 1 4.5471 -5.7302 1.6929 25 1 5.4232 -8.1871 1.9895 26 1 4.5014 -9.6395 -0.0491 27 1 3.8067 -4.1311 0.9952 28 1 3.9927 -3.3999 -0.6593 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613929911.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:29 Heat of formation + Delta-G solvation = 84.340606 kcal Electronic energy + Delta-G solvation = -14372.570836 eV Core-core repulsion = 11813.053005 eV Total energy + Delta-G solvation = -2559.517831 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.14732 -38.83336 -35.95568 -32.63390 -31.75065 -29.94708 -28.04125 -26.17637 -25.43005 -22.73791 -20.92373 -20.02679 -18.86110 -17.49803 -16.72912 -15.73731 -15.03047 -14.75667 -14.33492 -13.92637 -13.78822 -12.78067 -12.66164 -12.52296 -12.19884 -12.11575 -11.49012 -11.28244 -11.02746 -10.93643 -10.53905 -10.50811 -10.27025 -9.27875 -8.98345 -8.47525 -7.84588 -7.55417 -6.33877 -4.80249 2.02631 2.58806 2.95267 3.06541 3.13305 3.16738 3.84953 4.12470 4.40930 4.44778 4.88450 4.98010 5.15696 5.23080 5.63864 5.68092 5.72970 5.87475 5.89974 6.01716 6.10508 6.29934 6.44338 6.76899 7.16797 7.30257 7.84490 7.91097 8.25780 8.87321 9.32434 10.40000 10.59636 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.060192 B = 0.006166 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.063767 B = 4539.645885 C = 4844.809044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.579 3.421 10 O -0.568 6.568 11 N -0.657 5.657 12 C 0.102 3.898 13 C 0.117 3.883 14 N -0.355 5.355 15 C 0.058 3.942 16 C -0.283 4.283 17 C 0.037 3.963 18 N -0.300 5.300 19 C 0.112 3.888 20 H 0.271 0.729 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.128 0.872 24 H 0.173 0.827 25 H 0.144 0.856 26 H 0.179 0.821 27 H 0.073 0.927 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.230 -9.354 1.541 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.387 3.613 10 O -0.449 6.449 11 N -0.400 5.400 12 C -0.023 4.023 13 C 0.015 3.985 14 N -0.137 5.137 15 C -0.089 4.089 16 C -0.313 4.313 17 C -0.149 4.149 18 N -0.121 5.121 19 C -0.014 4.014 20 H 0.082 0.918 21 H 0.097 0.903 22 H 0.086 0.914 23 H 0.145 0.855 24 H 0.190 0.810 25 H 0.162 0.838 26 H 0.196 0.804 27 H 0.091 0.909 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.432 -8.806 0.417 12.199 hybrid contribution 1.037 0.647 0.871 1.501 sum 9.469 -8.159 1.288 12.565 Atomic orbital electron populations 1.70004 1.07145 1.27716 1.34539 1.25752 0.94712 1.00472 0.92536 0.86284 0.80081 0.80939 0.78987 1.19565 1.20285 1.18798 1.20792 0.93625 0.88535 1.54240 0.91180 1.18120 0.86550 0.80459 0.76125 1.90639 1.13724 1.85038 1.55479 1.50231 1.04993 1.03967 1.80835 1.23159 0.95381 0.84257 0.99506 1.23914 0.93795 0.80390 1.00420 1.48913 1.38509 1.07838 1.18451 1.22584 0.95569 0.99633 0.91083 1.21461 1.12237 0.93335 1.04240 1.23833 0.97161 0.99970 0.93948 1.77348 1.23060 0.89055 1.22621 1.23144 0.88059 0.90478 0.99673 0.91777 0.90342 0.91423 0.85462 0.80960 0.83828 0.80415 0.90923 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.57 11.83 55.55 0.66 -21.91 15 2 C 0.09 2.34 5.50 -17.37 -0.10 2.24 15 3 Si 0.91 19.58 29.56 -169.99 -5.02 14.55 15 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 15 5 H -0.28 -5.84 7.11 56.52 0.40 -5.43 15 6 H -0.26 -5.45 7.11 56.52 0.40 -5.04 15 7 C -0.54 -14.78 9.33 -35.63 -0.33 -15.11 15 8 H 0.07 1.76 7.67 -52.49 -0.40 1.36 15 9 C 0.58 16.43 7.98 -12.99 -0.10 16.33 15 10 O -0.57 -18.51 15.75 5.21 0.08 -18.43 15 11 N -0.66 -14.65 3.61 -180.00 -0.65 -15.30 15 12 C 0.10 1.91 8.64 -2.96 -0.03 1.88 15 13 C 0.12 1.84 5.21 -70.15 -0.37 1.48 15 14 N -0.35 -5.30 3.81 -56.41 -0.22 -5.51 15 15 C 0.06 0.74 10.70 -17.22 -0.18 0.56 15 16 C -0.28 -3.32 10.80 -40.01 -0.43 -3.75 15 17 C 0.04 0.46 12.03 -17.36 -0.21 0.25 15 18 N -0.30 -4.64 12.58 30.62 0.39 -4.25 15 19 C 0.11 1.86 7.84 -2.85 -0.02 1.84 15 20 H 0.27 7.22 8.29 -40.82 -0.34 6.88 15 21 H 0.08 1.51 8.14 -51.93 -0.42 1.09 15 22 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 23 H 0.13 1.95 8.14 -51.93 -0.42 1.53 15 24 H 0.17 1.79 6.69 -52.49 -0.35 1.44 15 25 H 0.14 1.30 8.06 -52.48 -0.42 0.88 15 26 H 0.18 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.07 1.05 6.30 -51.93 -0.33 0.72 15 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 LS Contribution 254.13 15.07 3.83 3.83 Total: -1.00 -34.81 254.13 -5.46 -40.27 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -2.75 Total: 1.05 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.77 Total: 5.71 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.18 Total: -46.98 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.08 Total: -18.43 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.81 -5.46 -40.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613929911.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.608 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds