Wall clock time and date at job start Mon Mar 30 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86801 * 119.99847 * 2 1 4 4 H 1.48500 * 109.47325 * 269.99814 * 3 2 1 5 5 H 1.48505 * 109.47172 * 30.00150 * 3 2 1 6 6 H 1.48508 * 109.46908 * 149.99599 * 3 2 1 7 7 C 1.40051 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99842 * 359.97438 * 7 2 1 10 10 O 1.21681 * 120.00107 * 0.02562 * 9 7 2 11 11 N 1.34776 * 119.99777 * 179.97438 * 9 7 2 12 12 C 1.47579 * 134.49119 * 180.02562 * 11 9 7 13 13 C 1.53952 * 86.11714 * 155.36700 * 12 11 9 14 14 N 1.46495 * 113.74304 * 137.95605 * 13 12 11 15 15 C 1.34957 * 126.03329 * 276.89706 * 14 13 12 16 16 C 1.35317 * 107.74055 * 179.97438 * 15 14 13 17 17 C 1.39868 * 107.92640 * 0.02562 * 16 15 14 18 18 N 1.30844 * 108.19764 * 359.97438 * 17 16 15 19 19 C 1.47813 * 134.45882 * 359.87963 * 11 9 7 20 20 H 0.96998 * 120.00224 * 0.02562 * 1 2 3 21 21 H 1.08994 * 113.77134 * 41.06927 * 12 11 9 22 22 H 1.09007 * 113.87386 * 269.67799 * 12 11 9 23 23 H 1.08999 * 113.73704 * 269.15575 * 13 12 11 24 24 H 1.07995 * 126.12756 * 0.02562 * 15 14 13 25 25 H 1.08004 * 126.03278 * 180.02562 * 16 15 14 26 26 H 1.07995 * 125.89923 * 180.25722 * 17 16 15 27 27 H 1.09005 * 113.76915 * 90.36959 * 19 11 9 28 28 H 1.09002 * 113.83181 * 318.91319 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4381 2.6527 0.7001 6 1 3.5382 1.4402 0.7002 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0017 12 6 1.5544 -5.0697 0.0021 13 6 2.9274 -5.3427 -0.6385 14 7 3.6079 -6.5210 -0.0956 15 6 4.3497 -6.5604 1.0311 16 6 4.8008 -7.8270 1.1836 17 6 4.3188 -8.5875 0.1133 18 7 3.6034 -7.8056 -0.6541 19 6 3.3803 -4.0167 -0.0015 20 1 -0.4850 0.8400 -0.0004 21 1 0.7121 -5.2922 -0.6528 22 1 1.4423 -5.4961 0.9991 23 1 2.9147 -5.3239 -1.7283 24 1 4.5471 -5.7302 1.6929 25 1 5.4232 -8.1871 1.9895 26 1 4.5014 -9.6395 -0.0491 27 1 3.8067 -4.1311 0.9952 28 1 3.9927 -3.3999 -0.6593 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613929911.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:29 Heat of formation + Delta-G solvation = 58.834875 kcal Electronic energy + Delta-G solvation = -14373.676848 eV Core-core repulsion = 11813.053005 eV Total energy + Delta-G solvation = -2560.623843 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.24185 -40.37925 -37.96721 -34.71032 -33.05847 -30.96564 -29.79862 -27.82989 -27.05890 -24.10320 -21.93075 -21.48853 -20.40214 -18.93362 -18.29082 -17.70888 -16.44152 -16.23468 -15.80463 -15.44539 -15.03466 -14.22953 -14.16493 -13.94938 -13.74479 -13.34774 -13.08921 -13.04668 -12.74511 -12.66552 -12.16606 -12.00535 -11.57314 -10.98526 -10.37781 -10.01753 -9.50842 -9.36008 -8.36613 -6.93775 1.00290 1.37832 1.40266 1.46264 1.57307 2.03064 2.16999 2.34680 2.51542 3.12746 3.49043 3.69222 3.83125 4.05535 4.20425 4.38464 4.45548 4.54489 4.76104 4.84511 4.91171 4.99521 5.22024 5.26557 5.82992 5.87225 6.13635 6.29899 6.79388 6.83999 7.39253 8.32849 8.58906 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.060192 B = 0.006166 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.063767 B = 4539.645885 C = 4844.809044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.026 3.974 3 Si 1.003 2.997 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.559 4.559 8 H 0.092 0.908 9 C 0.561 3.439 10 O -0.630 6.630 11 N -0.674 5.674 12 C 0.096 3.904 13 C 0.145 3.855 14 N -0.371 5.371 15 C 0.048 3.952 16 C -0.278 4.278 17 C 0.040 3.960 18 N -0.342 5.342 19 C 0.119 3.881 20 H 0.277 0.723 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.129 0.871 24 H 0.195 0.805 25 H 0.174 0.826 26 H 0.211 0.789 27 H 0.101 0.899 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.246 -9.542 2.216 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.595 4.595 8 H 0.110 0.890 9 C 0.370 3.630 10 O -0.517 6.517 11 N -0.414 5.414 12 C -0.028 4.028 13 C 0.042 3.958 14 N -0.154 5.154 15 C -0.097 4.097 16 C -0.307 4.307 17 C -0.145 4.145 18 N -0.163 5.163 19 C -0.005 4.005 20 H 0.087 0.913 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.146 0.854 24 H 0.212 0.788 25 H 0.191 0.809 26 H 0.227 0.773 27 H 0.119 0.881 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.521 -9.067 1.099 14.702 hybrid contribution 0.151 0.495 0.708 0.877 sum 11.672 -8.572 1.807 14.594 Atomic orbital electron populations 1.70183 1.09718 1.29310 1.35923 1.27076 0.95568 1.05167 0.91079 0.84945 0.78804 0.74569 0.79552 1.18508 1.19821 1.16786 1.21325 0.94800 0.89006 1.54369 0.88955 1.18466 0.86156 0.82537 0.75846 1.90577 1.16268 1.86724 1.58107 1.49913 1.08070 1.03968 1.79454 1.23310 0.97109 0.82426 0.99993 1.23313 0.91468 0.80975 1.00085 1.48746 1.39681 1.07456 1.19504 1.23125 0.94985 1.01045 0.90526 1.21878 1.11687 0.92695 1.04451 1.24496 0.95492 1.01210 0.93337 1.77334 1.25024 0.89579 1.24357 1.23407 0.84997 0.90481 1.01631 0.91310 0.91953 0.90769 0.85358 0.78772 0.80864 0.77274 0.88132 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.98 11.83 21.84 0.26 -49.72 15 2 C 0.03 1.45 5.50 85.31 0.47 1.91 15 3 Si 1.00 39.66 29.56 68.60 2.03 41.69 15 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 15 6 H -0.24 -8.84 7.11 99.48 0.71 -8.13 15 7 C -0.56 -31.01 9.33 24.83 0.23 -30.77 15 8 H 0.09 4.51 7.67 -2.91 -0.02 4.49 15 9 C 0.56 32.81 7.98 86.36 0.69 33.50 15 10 O -0.63 -43.20 15.75 -4.29 -0.07 -43.27 15 11 N -0.67 -30.30 3.61 -841.61 -3.04 -33.34 15 12 C 0.10 3.66 8.64 86.49 0.75 4.40 15 13 C 0.15 4.42 5.21 46.74 0.24 4.66 15 14 N -0.37 -10.38 3.81 -332.37 -1.27 -11.65 15 15 C 0.05 1.09 10.70 83.54 0.89 1.98 15 16 C -0.28 -5.51 10.80 21.99 0.24 -5.27 15 17 C 0.04 0.89 12.03 85.23 1.03 1.91 15 18 N -0.34 -10.00 12.58 -57.02 -0.72 -10.72 15 19 C 0.12 3.72 7.84 86.43 0.68 4.40 15 20 H 0.28 15.18 8.29 -92.71 -0.77 14.41 15 21 H 0.06 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.07 2.69 8.14 -2.38 -0.02 2.68 15 23 H 0.13 3.87 8.14 -2.39 -0.02 3.85 15 24 H 0.20 3.29 6.69 -2.91 -0.02 3.28 15 25 H 0.17 2.33 8.06 -2.91 -0.02 2.31 15 26 H 0.21 3.00 8.06 -2.91 -0.02 2.97 15 27 H 0.10 2.60 6.30 -2.38 -0.02 2.59 15 28 H 0.10 2.89 8.14 -2.39 -0.02 2.87 15 Total: -1.00 -78.96 254.13 3.58 -75.38 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.17 Total: 14.91 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 5.22 Total: 16.73 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -4.77 Total: -105.43 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.07 Total: -43.27 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -78.96 3.58 -75.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613929911.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.214 kcal (2) G-P(sol) polarization free energy of solvation -78.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds