Wall clock time and date at job start Mon Mar 30 2020 03:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86806 * 119.99787 * 2 1 4 4 H 1.48502 * 109.46866 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46894 * 300.00011 * 3 2 1 6 6 H 1.48502 * 109.47112 * 60.00154 * 3 2 1 7 7 C 1.40117 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.46174 * 120.00030 * 359.97438 * 7 2 1 10 10 O 1.21736 * 119.99967 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00098 * 180.02562 * 9 7 2 12 12 C 1.39575 * 120.00122 * 185.57136 * 11 9 7 13 13 C 1.39416 * 120.49973 * 24.64265 * 12 11 9 14 14 C 1.38459 * 118.34776 * 179.97438 * 13 12 11 15 15 C 1.38313 * 119.25340 * 0.02562 * 14 13 12 16 16 N 1.31879 * 120.94656 * 359.97438 * 15 14 13 17 17 C 1.31793 * 121.81059 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.67994 * 180.02562 * 17 16 15 19 19 N 1.46892 * 109.47221 * 89.99808 * 18 17 16 20 20 H 0.97000 * 120.00047 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00485 * 5.56688 * 11 9 7 22 22 H 1.08005 * 120.82746 * 0.26125 * 13 12 11 23 23 H 1.08000 * 120.37020 * 180.02562 * 14 13 12 24 24 H 1.08001 * 119.52986 * 179.97438 * 15 14 13 25 25 H 1.09003 * 109.47238 * 210.00510 * 18 17 16 26 26 H 1.08999 * 109.46964 * 329.99923 * 18 17 16 27 27 H 1.00905 * 111.00129 * 179.97438 * 19 18 17 28 28 H 1.00899 * 111.00576 * 303.95744 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7004 1.3465 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0070 -1.2134 -0.0005 8 1 3.0870 -1.2134 -0.0010 9 6 1.2762 -2.4794 -0.0005 10 8 0.0588 -2.4794 -0.0005 11 7 1.9501 -3.6465 -0.0005 12 6 1.2572 -4.8524 -0.1179 13 6 0.0047 -4.8923 -0.7289 14 6 -0.6430 -6.1126 -0.8218 15 6 -0.0320 -7.2428 -0.3095 16 7 1.1540 -7.1721 0.2629 17 6 1.8056 -6.0318 0.3727 18 6 3.1588 -6.0064 1.0354 19 7 4.2028 -6.2256 0.0256 20 1 -0.4850 0.8400 0.0004 21 1 2.9166 -3.6486 0.0809 22 1 -0.4472 -3.9945 -1.1241 23 1 -1.6142 -6.1811 -1.2891 24 1 -0.5333 -8.1968 -0.3792 25 1 3.3118 -5.0381 1.5121 26 1 3.2098 -6.7937 1.7875 27 1 5.1203 -6.2126 0.4453 28 1 4.0462 -7.0873 -0.4754 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616572741.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:11 Heat of formation + Delta-G solvation = -4.936083 kcal Electronic energy + Delta-G solvation = -14574.248378 eV Core-core repulsion = 12010.859219 eV Total energy + Delta-G solvation = -2563.389159 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93940 -37.43345 -34.75581 -33.59974 -32.50099 -31.13198 -29.27733 -26.42268 -25.10632 -22.89701 -21.18221 -19.92800 -17.89073 -16.53275 -16.00163 -15.77509 -15.19512 -15.02668 -14.52430 -14.03543 -13.20713 -13.13791 -12.76742 -12.50895 -12.29214 -12.07027 -11.41196 -11.20704 -11.10551 -10.71350 -10.34821 -9.86649 -9.13981 -9.00896 -8.92124 -8.54881 -7.77088 -7.14816 -6.40892 -4.88396 1.71172 2.02762 3.03222 3.11864 3.16515 3.94711 4.19649 4.46141 4.53345 4.75182 5.03673 5.20769 5.47920 5.55968 5.71490 5.74706 6.01514 6.06614 6.21979 6.78498 6.95660 7.15103 7.20335 7.24925 7.53673 7.65690 7.93398 8.08568 8.54216 8.78942 9.13101 10.29041 10.48907 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038795 B = 0.008070 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.570420 B = 3468.668535 C = 4098.147336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.538 3.462 10 O -0.560 6.560 11 N -0.682 5.682 12 C 0.173 3.827 13 C -0.107 4.107 14 C -0.148 4.148 15 C 0.036 3.964 16 N -0.464 5.464 17 C 0.052 3.948 18 C 0.120 3.880 19 N -0.844 5.844 20 H 0.272 0.728 21 H 0.401 0.599 22 H 0.160 0.840 23 H 0.126 0.874 24 H 0.144 0.856 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.341 0.659 28 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 -7.936 -0.081 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.346 3.654 10 O -0.442 6.442 11 N -0.324 5.324 12 C 0.069 3.931 13 C -0.136 4.136 14 C -0.168 4.168 15 C -0.124 4.124 16 N -0.173 5.173 17 C -0.090 4.090 18 C -0.011 4.011 19 N -0.374 5.374 20 H 0.083 0.917 21 H 0.236 0.764 22 H 0.177 0.823 23 H 0.144 0.856 24 H 0.161 0.839 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.153 0.847 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.884 -7.745 -0.069 8.665 hybrid contribution 0.599 0.665 0.261 0.933 sum 4.484 -7.080 0.192 8.382 Atomic orbital electron populations 1.69987 1.07212 1.27847 1.33528 1.25758 0.94721 1.00616 0.92441 0.86202 0.80522 0.81060 0.78412 1.18523 1.19934 1.19964 1.20912 0.93989 0.88858 1.53218 0.90738 1.18468 0.87477 0.82188 0.77293 1.90581 1.13739 1.85996 1.53927 1.44206 1.10311 1.03968 1.73882 1.18769 0.93494 0.87540 0.93316 1.22086 0.94688 0.99195 0.97593 1.21999 1.00723 0.93262 1.00866 1.22253 0.92225 0.98111 0.99767 1.67166 1.08606 1.27339 1.14234 1.20663 0.97560 0.88519 1.02292 1.20394 0.86998 1.01407 0.92263 1.58690 1.04721 1.43661 1.30339 0.91686 0.76427 0.82274 0.85581 0.83869 0.89790 0.94042 0.84656 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.58 11.82 55.55 0.66 -20.93 15 2 C 0.09 2.28 5.50 -17.36 -0.10 2.19 15 3 Si 0.91 19.20 29.56 -169.99 -5.02 14.17 15 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 7 C -0.53 -14.38 9.54 -35.69 -0.34 -14.72 15 8 H 0.07 1.83 7.85 -52.49 -0.41 1.42 15 9 C 0.54 14.74 7.56 -13.08 -0.10 14.64 15 10 O -0.56 -17.05 12.21 5.16 0.06 -16.98 15 11 N -0.68 -15.49 4.96 -11.10 -0.06 -15.55 15 12 C 0.17 3.73 6.43 -83.61 -0.54 3.20 15 13 C -0.11 -2.32 8.81 -39.06 -0.34 -2.67 15 14 C -0.15 -2.63 10.10 -39.47 -0.40 -3.03 15 15 C 0.04 0.60 11.18 -17.50 -0.20 0.41 15 16 N -0.46 -8.44 10.27 -9.27 -0.10 -8.54 15 17 C 0.05 0.98 6.32 -82.32 -0.52 0.46 15 18 C 0.12 1.85 6.52 -4.98 -0.03 1.82 15 19 N -0.84 -11.11 9.61 -11.41 -0.11 -11.22 15 20 H 0.27 7.00 8.29 -40.82 -0.34 6.66 15 21 H 0.40 8.12 7.39 -40.82 -0.30 7.82 15 22 H 0.16 3.91 5.90 -52.48 -0.31 3.60 15 23 H 0.13 1.86 8.06 -52.49 -0.42 1.43 15 24 H 0.14 1.89 8.06 -52.49 -0.42 1.47 15 25 H 0.08 1.31 6.98 -51.93 -0.36 0.95 15 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 27 H 0.34 3.50 9.08 -39.29 -0.36 3.14 15 28 H 0.34 4.38 8.99 -39.29 -0.35 4.03 15 LS Contribution 250.44 15.07 3.77 3.77 Total: -1.00 -31.85 250.44 -5.85 -37.70 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -2.50 Total: 15.27 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.56 Total: 2.29 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.40 Total: -56.23 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.06 Total: -16.98 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.85 -5.85 -37.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616572741.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.768 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds