Wall clock time and date at job start Mon Mar 30 2020 03:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86806 * 119.99787 * 2 1 4 4 H 1.48502 * 109.46866 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46894 * 300.00011 * 3 2 1 6 6 H 1.48502 * 109.47112 * 60.00154 * 3 2 1 7 7 C 1.40117 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.46174 * 120.00030 * 359.97438 * 7 2 1 10 10 O 1.21736 * 119.99967 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00098 * 180.02562 * 9 7 2 12 12 C 1.39575 * 120.00122 * 185.57136 * 11 9 7 13 13 C 1.39416 * 120.49973 * 24.64265 * 12 11 9 14 14 C 1.38459 * 118.34776 * 179.97438 * 13 12 11 15 15 C 1.38313 * 119.25340 * 0.02562 * 14 13 12 16 16 N 1.31879 * 120.94656 * 359.97438 * 15 14 13 17 17 C 1.31793 * 121.81059 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.67994 * 180.02562 * 17 16 15 19 19 N 1.46892 * 109.47221 * 89.99808 * 18 17 16 20 20 H 0.97000 * 120.00047 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00485 * 5.56688 * 11 9 7 22 22 H 1.08005 * 120.82746 * 0.26125 * 13 12 11 23 23 H 1.08000 * 120.37020 * 180.02562 * 14 13 12 24 24 H 1.08001 * 119.52986 * 179.97438 * 15 14 13 25 25 H 1.09003 * 109.47238 * 210.00510 * 18 17 16 26 26 H 1.08999 * 109.46964 * 329.99923 * 18 17 16 27 27 H 1.00905 * 111.00129 * 179.97438 * 19 18 17 28 28 H 1.00899 * 111.00576 * 303.95744 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7004 1.3465 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0070 -1.2134 -0.0005 8 1 3.0870 -1.2134 -0.0010 9 6 1.2762 -2.4794 -0.0005 10 8 0.0588 -2.4794 -0.0005 11 7 1.9501 -3.6465 -0.0005 12 6 1.2572 -4.8524 -0.1179 13 6 0.0047 -4.8923 -0.7289 14 6 -0.6430 -6.1126 -0.8218 15 6 -0.0320 -7.2428 -0.3095 16 7 1.1540 -7.1721 0.2629 17 6 1.8056 -6.0318 0.3727 18 6 3.1588 -6.0064 1.0354 19 7 4.2028 -6.2256 0.0256 20 1 -0.4850 0.8400 0.0004 21 1 2.9166 -3.6486 0.0809 22 1 -0.4472 -3.9945 -1.1241 23 1 -1.6142 -6.1811 -1.2891 24 1 -0.5333 -8.1968 -0.3792 25 1 3.3118 -5.0381 1.5121 26 1 3.2098 -6.7937 1.7875 27 1 5.1203 -6.2126 0.4453 28 1 4.0462 -7.0873 -0.4754 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616572741.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:10 Heat of formation + Delta-G solvation = -30.835438 kcal Electronic energy + Delta-G solvation = -14575.371458 eV Core-core repulsion = 12010.859219 eV Total energy + Delta-G solvation = -2564.512239 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50874 -39.31178 -36.11592 -35.34322 -34.51513 -32.60286 -30.88437 -28.36983 -26.44459 -24.55673 -22.62184 -21.79308 -19.71549 -18.13958 -17.70117 -17.39912 -16.81397 -16.39234 -15.88630 -15.70148 -14.86633 -14.79046 -14.41243 -14.15243 -13.69466 -13.59784 -13.21984 -12.86477 -12.74762 -12.53869 -11.99890 -11.61563 -10.98858 -10.66376 -10.45140 -9.81447 -9.61716 -8.85433 -8.39638 -6.97950 0.22633 0.44724 1.39305 1.40320 1.58428 2.19705 2.33921 2.82112 2.90268 3.40663 3.53007 3.82161 3.91046 4.10119 4.29619 4.43422 4.56333 4.63932 4.87273 5.22337 5.26932 5.38971 5.63707 5.75647 6.10367 6.12433 6.22366 6.62472 6.74851 7.06716 7.25418 8.27636 8.52788 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038795 B = 0.008070 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.570420 B = 3468.668535 C = 4098.147336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.031 3.969 3 Si 1.002 2.998 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.525 3.475 10 O -0.603 6.603 11 N -0.675 5.675 12 C 0.136 3.864 13 C -0.135 4.135 14 C -0.143 4.143 15 C 0.050 3.950 16 N -0.467 5.467 17 C 0.060 3.940 18 C 0.124 3.876 19 N -0.845 5.845 20 H 0.279 0.721 21 H 0.410 0.590 22 H 0.121 0.879 23 H 0.157 0.843 24 H 0.190 0.810 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.359 0.641 28 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 -8.929 0.105 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.185 4.185 3 Si 0.821 3.179 4 H -0.168 1.168 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.597 4.597 8 H 0.111 0.889 9 C 0.332 3.668 10 O -0.489 6.489 11 N -0.318 5.318 12 C 0.034 3.966 13 C -0.164 4.164 14 C -0.163 4.163 15 C -0.109 4.109 16 N -0.176 5.176 17 C -0.082 4.082 18 C -0.007 4.007 19 N -0.378 5.378 20 H 0.089 0.911 21 H 0.247 0.753 22 H 0.139 0.861 23 H 0.174 0.826 24 H 0.207 0.793 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.174 0.826 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.308 -8.804 0.117 10.281 hybrid contribution 0.110 0.778 0.178 0.806 sum 5.419 -8.026 0.296 9.688 Atomic orbital electron populations 1.70135 1.09557 1.29455 1.34802 1.26995 0.95563 1.04958 0.91022 0.84904 0.79408 0.74993 0.78641 1.16847 1.19268 1.19201 1.21432 0.95059 0.89450 1.53718 0.88917 1.18813 0.87235 0.83769 0.76935 1.90547 1.15478 1.87053 1.55828 1.43725 1.10536 1.03503 1.74045 1.19022 0.94071 0.87990 0.95493 1.21961 0.95699 0.99580 0.99164 1.22301 1.01706 0.91972 1.00369 1.23016 0.91434 0.99389 0.97036 1.67348 1.09218 1.26560 1.14521 1.21089 0.98677 0.87524 1.00864 1.20350 0.85904 1.01763 0.92659 1.58600 1.05191 1.44065 1.29959 0.91107 0.75300 0.86134 0.82558 0.79299 0.90318 0.92466 0.82574 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.78 11.82 21.85 0.26 -47.52 15 2 C 0.03 1.68 5.50 85.33 0.47 2.15 15 3 Si 1.00 39.33 29.56 68.60 2.03 41.35 15 4 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 6 H -0.27 -10.10 7.11 99.48 0.71 -9.39 15 7 C -0.56 -30.84 9.54 24.79 0.24 -30.61 15 8 H 0.09 4.56 7.85 -2.91 -0.02 4.54 15 9 C 0.52 29.97 7.56 86.30 0.65 30.62 15 10 O -0.60 -38.83 12.21 -4.46 -0.05 -38.89 15 11 N -0.68 -31.58 4.96 -307.23 -1.53 -33.10 15 12 C 0.14 5.99 6.43 38.38 0.25 6.23 15 13 C -0.14 -6.06 8.81 22.61 0.20 -5.86 15 14 C -0.14 -4.92 10.10 22.34 0.23 -4.69 15 15 C 0.05 1.53 11.18 84.70 0.95 2.48 15 16 N -0.47 -15.82 10.27 -183.24 -1.88 -17.70 15 17 C 0.06 2.21 6.32 42.75 0.27 2.48 15 18 C 0.12 3.62 6.52 85.56 0.56 4.17 15 19 N -0.85 -20.53 9.61 -190.02 -1.83 -22.35 15 20 H 0.28 14.78 8.29 -92.71 -0.77 14.02 15 21 H 0.41 16.87 7.39 -92.71 -0.69 16.18 15 22 H 0.12 6.36 5.90 -2.91 -0.02 6.34 15 23 H 0.16 4.29 8.06 -2.91 -0.02 4.27 15 24 H 0.19 4.03 8.06 -2.91 -0.02 4.01 15 25 H 0.08 2.38 6.98 -2.39 -0.02 2.36 15 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 27 H 0.36 6.51 9.08 -89.69 -0.81 5.70 15 28 H 0.35 8.06 8.99 -89.69 -0.81 7.25 15 Total: -1.00 -71.87 250.44 -0.27 -72.14 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: -1.08 Total: 39.09 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 3.80 Total: 6.98 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -4.97 Total: -120.68 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.05 Total: -38.89 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.35 kcal Total: -71.87 -0.27 -72.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616572741.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.309 kcal (2) G-P(sol) polarization free energy of solvation -71.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds