Wall clock time and date at job start Mon Mar 30 2020 03:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 N 1.31816 * 119.67325 * 90.00178 * 13 12 11 15 15 C 1.31857 * 121.79666 * 179.97438 * 14 13 12 16 16 C 1.38268 * 120.92972 * 0.02562 * 15 14 13 17 17 C 1.38502 * 119.24350 * 359.97438 * 16 15 14 18 18 C 1.38892 * 119.66726 * 269.72634 * 13 12 11 19 19 N 1.39706 * 120.49519 * 0.02562 * 18 13 12 20 20 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 22 22 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 23 23 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 24 24 H 1.08001 * 119.53077 * 179.97438 * 15 14 13 25 25 H 1.07999 * 120.38047 * 180.02562 * 16 15 14 26 26 H 1.08000 * 120.81676 * 179.97438 * 17 16 15 27 27 H 0.97006 * 120.00192 * 0.02562 * 19 18 13 28 28 H 0.97005 * 120.00325 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 7 2.6182 -6.5573 1.1492 15 6 3.4740 -7.5591 1.1999 16 6 3.9659 -8.1328 0.0420 17 6 3.5494 -7.6440 -1.1852 18 6 2.6402 -6.5886 -1.2029 19 7 2.1864 -6.0642 -2.4157 20 1 -0.4851 0.8400 -0.0004 21 1 2.9191 -3.6476 0.0027 22 1 0.5889 -4.9739 0.8903 23 1 0.5910 -4.9743 -0.8897 24 1 3.7959 -7.9363 2.1593 25 1 4.6663 -8.9533 0.0938 26 1 3.9176 -8.0727 -2.1054 27 1 1.5566 -5.3264 -2.4198 28 1 2.5010 -6.4379 -3.2537 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616573466.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:57 Heat of formation + Delta-G solvation = -34.739986 kcal Electronic energy + Delta-G solvation = -14273.820000 eV Core-core repulsion = 11709.138447 eV Total energy + Delta-G solvation = -2564.681553 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27678 -39.25366 -36.20398 -35.34246 -34.49039 -32.74045 -30.33939 -28.79433 -26.87853 -23.92903 -22.94082 -21.69082 -19.41548 -18.55046 -17.89687 -17.51559 -16.93282 -16.20034 -15.89176 -15.71135 -15.15212 -14.82037 -14.50348 -14.13476 -13.77066 -13.29992 -13.10546 -12.74142 -12.68782 -12.55104 -12.25831 -12.02292 -10.93510 -10.50296 -10.33267 -9.89057 -9.52202 -8.63339 -8.27987 -6.86633 0.25177 0.58471 1.39983 1.41847 1.57281 2.24836 2.46135 2.80447 2.89173 3.30379 3.50259 3.60776 3.84977 4.02285 4.27990 4.51317 4.62026 4.70604 4.86979 5.10188 5.31030 5.32109 5.76274 5.85206 6.14272 6.24073 6.36586 6.83814 6.85829 7.24091 7.50051 8.46770 8.66098 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.047521 B = 0.006220 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.068852 B = 4500.753232 C = 4548.295921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.539 3.461 10 O -0.630 6.630 11 N -0.743 5.743 12 C 0.197 3.803 13 C 0.014 3.986 14 N -0.470 5.470 15 C 0.019 3.981 16 C -0.106 4.106 17 C -0.159 4.159 18 C 0.182 3.818 19 N -0.858 5.858 20 H 0.275 0.725 21 H 0.389 0.611 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.173 0.827 25 H 0.175 0.825 26 H 0.166 0.834 27 H 0.400 0.600 28 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 -13.513 -4.487 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.819 3.181 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.609 4.609 8 H 0.102 0.898 9 C 0.344 3.656 10 O -0.518 6.518 11 N -0.398 5.398 12 C 0.071 3.929 13 C -0.128 4.128 14 N -0.179 5.179 15 C -0.142 4.142 16 C -0.126 4.126 17 C -0.189 4.189 18 C 0.072 3.928 19 N -0.398 5.398 20 H 0.085 0.915 21 H 0.222 0.778 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.190 0.810 25 H 0.192 0.808 26 H 0.183 0.817 27 H 0.229 0.771 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 9.418 -13.093 -3.714 16.551 hybrid contribution 0.410 0.501 -0.874 1.088 sum 9.828 -12.593 -4.588 16.620 Atomic orbital electron populations 1.70181 1.09485 1.29006 1.36280 1.26976 0.95559 1.04903 0.91177 0.84995 0.78641 0.74971 0.79505 1.18337 1.19706 1.17518 1.21386 0.94590 0.90042 1.54866 0.89776 1.18618 0.86839 0.84081 0.76082 1.90552 1.16037 1.87833 1.57338 1.45817 1.08848 1.04001 1.81096 1.19365 0.92162 0.81625 0.99700 1.20489 1.03412 1.00443 0.88492 1.67207 1.10726 1.10959 1.28977 1.22966 0.96486 0.94268 1.00447 1.22334 0.98813 0.99908 0.91589 1.21453 0.99439 0.97284 1.00762 1.18742 0.93463 0.93466 0.87150 1.42583 1.51998 1.40533 1.04690 0.91484 0.77799 0.94858 0.92702 0.80977 0.80805 0.81651 0.77082 0.75671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.92 11.83 21.83 0.26 -50.66 15 2 C 0.03 1.65 5.50 85.30 0.47 2.12 15 3 Si 1.00 41.61 29.56 68.60 2.03 43.63 15 4 H -0.26 -10.14 7.11 99.48 0.71 -9.44 15 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 6 H -0.25 -9.84 7.11 99.48 0.71 -9.14 15 7 C -0.57 -33.36 9.54 24.83 0.24 -33.13 15 8 H 0.08 4.44 7.85 -2.91 -0.02 4.42 15 9 C 0.54 32.42 7.75 86.36 0.67 33.09 15 10 O -0.63 -43.30 15.02 -4.30 -0.06 -43.36 15 11 N -0.74 -35.91 5.54 -471.14 -2.61 -38.52 15 12 C 0.20 8.54 5.53 85.63 0.47 9.01 15 13 C 0.01 0.50 6.17 42.72 0.26 0.76 15 14 N -0.47 -16.25 10.27 -183.36 -1.88 -18.13 15 15 C 0.02 0.47 11.18 84.70 0.95 1.42 15 16 C -0.11 -1.96 10.10 22.34 0.23 -1.73 15 17 C -0.16 -3.17 10.05 22.59 0.23 -2.94 15 18 C 0.18 4.95 6.76 38.30 0.26 5.21 15 19 N -0.86 -20.25 8.99 -51.12 -0.46 -20.71 15 20 H 0.28 15.41 8.29 -92.71 -0.77 14.65 15 21 H 0.39 17.20 8.44 -92.71 -0.78 16.42 15 22 H 0.03 1.63 8.14 -2.38 -0.02 1.61 15 23 H 0.05 2.34 6.53 -2.38 -0.02 2.33 15 24 H 0.17 3.27 8.06 -2.91 -0.02 3.25 15 25 H 0.17 1.68 8.06 -2.91 -0.02 1.66 15 26 H 0.17 2.07 8.06 -2.91 -0.02 2.05 15 27 H 0.40 11.20 6.84 -92.70 -0.63 10.57 15 28 H 0.41 6.69 8.86 -92.70 -0.82 5.87 15 Total: -1.00 -79.92 254.24 0.02 -79.90 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -1.01 Total: 34.04 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 3.77 Total: 13.81 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.70 Total: -128.02 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.06 Total: -43.36 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -79.92 0.02 -79.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616573466.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.161 kcal (2) G-P(sol) polarization free energy of solvation -79.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds