Wall clock time and date at job start Mon Mar 30 2020 02:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35542 * 116.99784 * 2 1 4 4 C 1.39141 * 119.90467 * 359.97438 * 3 2 1 5 5 C 1.36396 * 120.47416 * 180.02562 * 4 3 2 6 6 C 1.40942 * 120.26145 * 359.97438 * 5 4 3 7 7 C 1.41265 * 120.10399 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99791 * 24.51350 * 7 6 5 9 9 C 1.39857 * 120.00136 * 204.51412 * 7 6 5 10 10 N 1.30895 * 120.00365 * 17.81143 * 9 7 6 11 11 Si 1.86809 * 120.00197 * 197.80954 * 9 7 6 12 12 H 1.48498 * 109.46796 * 89.99646 * 11 9 7 13 13 H 1.48489 * 109.47360 * 210.00168 * 11 9 7 14 14 H 1.48499 * 109.46614 * 330.00409 * 11 9 7 15 15 C 1.40528 * 119.79918 * 359.76593 * 6 5 4 16 16 C 1.38963 * 119.53602 * 0.50324 * 15 6 5 17 17 C 1.47507 * 120.13152 * 179.74972 * 16 15 6 18 18 N 1.29394 * 119.99674 * 179.45058 * 17 16 15 19 19 O 1.41603 * 120.00223 * 180.27840 * 18 17 16 20 20 H 1.08998 * 109.46979 * 299.99981 * 1 2 3 21 21 H 1.09002 * 109.47077 * 59.99416 * 1 2 3 22 22 H 1.08991 * 109.46967 * 179.97438 * 1 2 3 23 23 H 1.08002 * 119.76639 * 0.03678 * 4 3 2 24 24 H 1.07996 * 119.86924 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00144 * 179.97438 * 10 9 7 26 26 H 1.08000 * 120.23497 * 180.27785 * 15 6 5 27 27 H 1.07994 * 120.00430 * 359.73000 * 17 16 15 28 28 H 0.96696 * 114.00437 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2845 2.3734 -0.0005 5 6 1.8915 3.5948 -0.0011 6 6 3.2978 3.6890 -0.0005 7 6 3.9231 4.9557 -0.0005 8 1 3.3988 5.8167 0.3872 9 6 5.2210 5.0949 -0.5026 10 7 5.7262 4.1683 -1.2768 11 14 6.2337 6.6035 -0.0684 12 1 7.0080 6.3398 1.1710 13 1 7.1687 6.9089 -1.1807 14 1 5.3291 7.7607 0.1499 15 6 4.0761 2.5190 0.0055 16 6 3.4489 1.2789 0.0003 17 6 4.2532 0.0424 0.0010 18 7 3.6664 -1.1109 0.0069 19 8 4.4383 -2.2980 0.0135 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2063 2.3106 -0.0004 24 1 1.2923 4.4932 -0.0019 25 1 6.6263 4.2650 -1.6253 26 1 5.1542 2.5830 0.0105 27 1 5.3316 0.0995 0.0012 28 1 3.9122 -3.1093 0.0173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642879646.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:38 Heat of formation + Delta-G solvation = -7.522522 kcal Electronic energy + Delta-G solvation = -14434.363953 eV Core-core repulsion = 11838.569886 eV Total energy + Delta-G solvation = -2595.794067 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.88891 -36.47789 -36.06971 -33.56807 -32.63963 -29.19659 -29.15051 -26.89776 -24.67341 -22.55441 -20.90449 -19.44879 -17.26369 -16.87671 -16.80716 -15.28088 -14.94778 -14.80643 -14.20947 -14.02477 -13.18410 -12.99206 -12.56303 -12.39328 -12.07874 -11.69268 -11.29523 -11.11851 -10.79875 -10.67779 -10.07359 -9.92597 -9.72882 -9.61688 -9.12594 -9.03150 -7.51004 -7.06852 -6.76842 -4.32146 1.97588 2.75798 3.07453 3.10121 3.11175 3.50152 3.75409 3.92483 4.34103 4.58148 5.51341 5.53320 5.65587 5.73109 5.90238 6.07037 6.20812 6.50596 6.81146 6.94481 7.02356 7.17703 7.33150 7.38067 7.63045 7.85990 8.04536 8.36586 8.42326 8.56177 8.81364 8.86158 10.17497 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.008487 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.893534 B = 3298.309280 C = 4064.622220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.040 3.960 4 C -0.181 4.181 5 C -0.167 4.167 6 C 0.079 3.921 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.075 3.925 10 N -0.801 5.801 11 Si 0.908 3.092 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.263 1.263 15 C -0.097 4.097 16 C -0.076 4.076 17 C 0.163 3.837 18 N -0.324 5.324 19 O -0.442 6.442 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.281 0.719 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -3.677 1.691 5.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.213 6.213 3 C -0.006 4.006 4 C -0.200 4.200 5 C -0.188 4.188 6 C 0.077 3.923 7 C -0.493 4.493 8 H 0.097 0.903 9 C -0.142 4.142 10 N -0.428 5.428 11 Si 0.733 3.267 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.187 1.187 15 C -0.119 4.119 16 C -0.079 4.079 17 C -0.045 4.045 18 N -0.069 5.069 19 O -0.345 6.345 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.100 0.900 23 H 0.119 0.881 24 H 0.118 0.882 25 H 0.092 0.908 26 H 0.151 0.849 27 H 0.127 0.873 28 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -3.524 -4.066 1.544 5.597 hybrid contribution 0.728 0.573 0.028 0.926 sum -2.797 -3.493 1.572 4.742 Atomic orbital electron populations 1.22766 0.81620 1.01805 1.00105 1.86104 1.18275 1.27152 1.89772 1.18743 0.90906 0.83555 1.07427 1.20418 0.97748 0.92775 1.09025 1.20744 0.94892 0.95274 1.07883 1.17444 0.90512 0.93256 0.91130 1.19425 0.98500 0.94838 1.36542 0.90306 1.25854 0.97972 0.97804 0.92527 1.69806 1.16305 1.33855 1.22786 0.86308 0.79686 0.81706 0.79006 1.19294 1.20399 1.18707 1.21379 1.00161 0.88845 1.01513 1.17581 0.88800 0.90517 1.10982 1.24435 0.98032 0.90480 0.91596 1.77074 1.20712 0.92657 1.16437 1.88339 1.35323 1.14850 1.95983 0.94046 0.94031 0.89999 0.88065 0.88238 0.90776 0.84897 0.87346 0.75951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.80 101.05 0.99 1.51 15 2 O -0.30 -6.25 8.35 -18.32 -0.15 -6.40 15 3 C 0.04 0.91 6.72 -38.34 -0.26 0.66 15 4 C -0.18 -3.92 8.95 -39.91 -0.36 -4.28 15 5 C -0.17 -3.88 9.72 -39.22 -0.38 -4.26 15 6 C 0.08 2.00 5.57 -106.86 -0.60 1.40 15 7 C -0.46 -11.69 9.04 -37.83 -0.34 -12.03 15 8 H 0.08 1.91 7.91 -52.49 -0.41 1.50 15 9 C 0.08 1.81 5.13 -17.35 -0.09 1.72 15 10 N -0.80 -19.95 10.97 55.54 0.61 -19.35 15 11 Si 0.91 18.09 29.60 -169.99 -5.03 13.06 15 12 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 13 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 14 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 15 C -0.10 -2.41 8.42 -38.45 -0.32 -2.73 15 16 C -0.08 -1.80 5.88 -104.94 -0.62 -2.42 15 17 C 0.16 3.59 10.90 -14.80 -0.16 3.43 15 18 N -0.32 -6.90 9.96 32.11 0.32 -6.58 15 19 O -0.44 -8.07 14.95 -11.47 -0.17 -8.24 15 20 H 0.04 0.61 7.65 -51.93 -0.40 0.21 15 21 H 0.04 0.62 7.65 -51.93 -0.40 0.22 15 22 H 0.08 1.06 8.14 -51.93 -0.42 0.63 15 23 H 0.10 1.89 6.25 -52.49 -0.33 1.56 15 24 H 0.10 2.13 8.06 -52.49 -0.42 1.70 15 25 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 26 H 0.13 3.35 6.17 -52.49 -0.32 3.02 15 27 H 0.11 2.21 8.06 -52.49 -0.42 1.79 15 28 H 0.39 5.08 9.28 45.56 0.42 5.50 15 LS Contribution 252.72 15.07 3.81 3.81 Total: -1.00 -28.65 252.72 -4.59 -33.25 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -1.84 Total: 7.46 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.13 Total: -17.01 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.93 Total: -25.92 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.32 Total: -14.64 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.65 -4.59 -33.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642879646.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.724 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds