Wall clock time and date at job start Mon Mar 30 2020 02:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35542 * 116.99784 * 2 1 4 4 C 1.39141 * 119.90467 * 359.97438 * 3 2 1 5 5 C 1.36396 * 120.47416 * 180.02562 * 4 3 2 6 6 C 1.40942 * 120.26145 * 359.97438 * 5 4 3 7 7 C 1.41265 * 120.10399 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99791 * 24.51350 * 7 6 5 9 9 C 1.39857 * 120.00136 * 204.51412 * 7 6 5 10 10 N 1.30895 * 120.00365 * 17.81143 * 9 7 6 11 11 Si 1.86809 * 120.00197 * 197.80954 * 9 7 6 12 12 H 1.48498 * 109.46796 * 89.99646 * 11 9 7 13 13 H 1.48489 * 109.47360 * 210.00168 * 11 9 7 14 14 H 1.48499 * 109.46614 * 330.00409 * 11 9 7 15 15 C 1.40528 * 119.79918 * 359.76593 * 6 5 4 16 16 C 1.38963 * 119.53602 * 0.50324 * 15 6 5 17 17 C 1.47507 * 120.13152 * 179.74972 * 16 15 6 18 18 N 1.29394 * 119.99674 * 179.45058 * 17 16 15 19 19 O 1.41603 * 120.00223 * 180.27840 * 18 17 16 20 20 H 1.08998 * 109.46979 * 299.99981 * 1 2 3 21 21 H 1.09002 * 109.47077 * 59.99416 * 1 2 3 22 22 H 1.08991 * 109.46967 * 179.97438 * 1 2 3 23 23 H 1.08002 * 119.76639 * 0.03678 * 4 3 2 24 24 H 1.07996 * 119.86924 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00144 * 179.97438 * 10 9 7 26 26 H 1.08000 * 120.23497 * 180.27785 * 15 6 5 27 27 H 1.07994 * 120.00430 * 359.73000 * 17 16 15 28 28 H 0.96696 * 114.00437 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2845 2.3734 -0.0005 5 6 1.8915 3.5948 -0.0011 6 6 3.2978 3.6890 -0.0005 7 6 3.9231 4.9557 -0.0005 8 1 3.3988 5.8167 0.3872 9 6 5.2210 5.0949 -0.5026 10 7 5.7262 4.1683 -1.2768 11 14 6.2337 6.6035 -0.0684 12 1 7.0080 6.3398 1.1710 13 1 7.1687 6.9089 -1.1807 14 1 5.3291 7.7607 0.1499 15 6 4.0761 2.5190 0.0055 16 6 3.4489 1.2789 0.0003 17 6 4.2532 0.0424 0.0010 18 7 3.6664 -1.1109 0.0069 19 8 4.4383 -2.2980 0.0135 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2063 2.3106 -0.0004 24 1 1.2923 4.4932 -0.0019 25 1 6.6263 4.2650 -1.6253 26 1 5.1542 2.5830 0.0105 27 1 5.3316 0.0995 0.0012 28 1 3.9122 -3.1093 0.0173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642879646.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:38 Heat of formation + Delta-G solvation = -26.358107 kcal Electronic energy + Delta-G solvation = -14435.180725 eV Core-core repulsion = 11838.569886 eV Total energy + Delta-G solvation = -2596.610839 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55963 -38.13440 -37.68491 -35.31263 -34.31791 -30.97659 -30.86262 -28.31701 -26.41560 -24.28197 -22.63758 -21.17560 -19.00509 -18.52946 -18.44620 -16.97959 -16.58811 -16.27040 -15.79895 -15.66701 -14.87155 -14.56706 -14.24537 -14.05677 -13.76363 -13.31285 -12.85296 -12.74746 -12.38217 -12.30701 -11.70292 -11.59804 -11.42937 -11.27320 -10.80816 -10.74783 -9.27446 -8.84603 -8.54494 -6.19375 0.22445 1.01113 1.44600 1.48875 1.56730 1.77402 2.25569 2.27680 2.78192 2.85500 3.69875 3.86443 4.29972 4.45102 4.53408 4.59844 4.79184 4.86478 5.02829 5.17266 5.28234 5.41038 5.55282 5.77518 5.90253 6.10104 6.23346 6.57595 6.82061 6.95070 6.98056 7.09524 8.41105 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.008487 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.893534 B = 3298.309280 C = 4064.622220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.315 6.315 3 C 0.041 3.959 4 C -0.178 4.178 5 C -0.174 4.174 6 C 0.049 3.951 7 C -0.496 4.496 8 H 0.079 0.921 9 C 0.037 3.963 10 N -0.833 5.833 11 Si 0.978 3.022 12 H -0.264 1.264 13 H -0.273 1.273 14 H -0.259 1.259 15 C -0.116 4.116 16 C -0.090 4.090 17 C 0.149 3.851 18 N -0.327 5.327 19 O -0.434 6.434 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.112 0.888 23 H 0.135 0.865 24 H 0.113 0.887 25 H 0.287 0.713 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.340 -4.149 1.913 6.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.228 6.228 3 C -0.006 4.006 4 C -0.197 4.197 5 C -0.195 4.195 6 C 0.047 3.953 7 C -0.526 4.526 8 H 0.097 0.903 9 C -0.177 4.177 10 N -0.460 5.460 11 Si 0.800 3.200 12 H -0.189 1.189 13 H -0.197 1.197 14 H -0.182 1.182 15 C -0.138 4.138 16 C -0.093 4.093 17 C -0.060 4.060 18 N -0.069 5.069 19 O -0.344 6.344 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.130 0.870 23 H 0.153 0.847 24 H 0.131 0.869 25 H 0.098 0.902 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -4.403 -4.553 1.767 6.575 hybrid contribution 0.841 0.476 -0.047 0.967 sum -3.562 -4.077 1.720 5.680 Atomic orbital electron populations 1.23128 0.78792 1.04252 1.01085 1.86075 1.21187 1.26130 1.89438 1.18918 0.90891 0.84670 1.06141 1.20721 0.99450 0.91812 1.07706 1.20988 0.94370 0.96615 1.07515 1.17790 0.91780 0.93644 0.92126 1.19668 0.99847 0.95030 1.38034 0.90277 1.26635 0.98531 1.00703 0.91837 1.69866 1.16884 1.35697 1.23574 0.85249 0.77979 0.78029 0.78739 1.18914 1.19745 1.18241 1.21265 0.99618 0.89582 1.03292 1.17762 0.89861 0.90793 1.10859 1.24327 0.98272 0.90362 0.93002 1.76898 1.21652 0.93348 1.15047 1.88325 1.35673 1.14906 1.95532 0.92831 0.93110 0.87010 0.84715 0.86873 0.90230 0.86284 0.86651 0.73222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.80 113.37 1.11 1.74 15 2 O -0.31 -12.46 8.35 -88.47 -0.74 -13.20 15 3 C 0.04 1.82 6.72 23.08 0.16 1.98 15 4 C -0.18 -7.47 8.95 22.06 0.20 -7.28 15 5 C -0.17 -8.05 9.72 22.50 0.22 -7.84 15 6 C 0.05 2.52 5.57 -21.31 -0.12 2.40 15 7 C -0.50 -25.60 9.04 23.41 0.21 -25.39 15 8 H 0.08 3.91 7.91 -2.91 -0.02 3.89 15 9 C 0.04 1.79 5.13 85.22 0.44 2.23 15 10 N -0.83 -42.51 10.97 21.81 0.24 -42.27 15 11 Si 0.98 37.31 29.60 68.60 2.03 39.34 15 12 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 13 H -0.27 -10.02 7.11 99.48 0.71 -9.31 15 14 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 15 C -0.12 -5.91 8.42 23.00 0.19 -5.72 15 16 C -0.09 -4.31 5.88 -20.07 -0.12 -4.43 15 17 C 0.15 6.54 10.90 87.50 0.95 7.50 15 18 N -0.33 -13.49 9.96 -52.33 -0.52 -14.01 15 19 O -0.43 -14.89 14.95 -38.79 -0.58 -15.47 15 20 H 0.05 1.38 7.65 -2.39 -0.02 1.36 15 21 H 0.05 1.34 7.65 -2.39 -0.02 1.32 15 22 H 0.11 2.46 8.14 -2.39 -0.02 2.44 15 23 H 0.14 4.62 6.25 -2.91 -0.02 4.61 15 24 H 0.11 4.77 8.06 -2.91 -0.02 4.75 15 25 H 0.29 13.33 8.30 -92.71 -0.77 12.56 15 26 H 0.12 6.29 6.17 -2.91 -0.02 6.27 15 27 H 0.12 4.77 8.06 -2.91 -0.02 4.75 15 28 H 0.42 9.55 9.28 -74.06 -0.69 8.86 15 Total: -1.00 -61.08 252.72 4.17 -56.91 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.50 Total: 23.50 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.24 Total: -34.80 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.28 Total: -56.27 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.32 Total: -28.67 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -61.08 4.17 -56.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642879646.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.548 kcal (2) G-P(sol) polarization free energy of solvation -61.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds