Wall clock time and date at job start Mon Mar 30 2020 03:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00205 * 2 1 4 4 H 1.48501 * 109.46846 * 269.99748 * 3 2 1 5 5 H 1.48499 * 109.47227 * 29.98982 * 3 2 1 6 6 H 1.48500 * 109.47637 * 149.99784 * 3 2 1 7 7 C 1.37876 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00611 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99932 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47396 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00290 * 179.97438 * 10 9 7 12 12 O 1.21599 * 119.99759 * 0.02562 * 11 10 9 13 13 C 1.47421 * 119.99918 * 179.97438 * 11 10 9 14 14 C 1.39977 * 120.61117 * 354.10273 * 13 11 10 15 15 C 1.38332 * 118.36716 * 180.02562 * 14 13 11 16 16 C 1.38380 * 119.50890 * 0.27404 * 15 14 13 17 17 N 1.31846 * 121.21541 * 359.40100 * 16 15 14 18 18 C 1.32428 * 121.77554 * 0.63658 * 17 16 15 19 19 N 1.38270 * 119.82499 * 179.68319 * 18 17 16 20 20 H 0.97001 * 119.99830 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47651 * 59.99798 * 9 7 2 22 22 H 1.08999 * 109.47007 * 299.99893 * 9 7 2 23 23 H 0.97004 * 119.99765 * 359.97438 * 10 9 7 24 24 H 1.07994 * 120.81515 * 359.97438 * 14 13 11 25 25 H 1.07999 * 120.24668 * 179.97438 * 15 14 13 26 26 H 1.08008 * 119.38973 * 179.70373 * 16 15 14 27 27 H 0.96999 * 119.99869 * 185.49774 * 19 18 17 28 28 H 0.97002 * 120.00290 * 5.49535 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1151 -1.8974 0.0014 13 6 5.8163 -4.2116 0.0014 14 6 4.9240 -5.2829 0.1257 15 6 5.4356 -6.5682 0.1210 16 6 6.8010 -6.7579 0.0008 17 7 7.6248 -5.7357 -0.1214 18 6 7.1890 -4.4852 -0.1225 19 7 8.0895 -3.4433 -0.2466 20 1 -0.4850 0.8401 -0.0004 21 1 3.8746 -0.6801 0.8911 22 1 3.8751 -0.6805 -0.8888 23 1 3.3694 -3.3126 0.0010 24 1 3.8625 -5.1103 0.2236 25 1 4.7747 -7.4171 0.2155 26 1 7.1988 -7.7620 0.0023 27 1 7.7838 -2.5261 -0.1679 28 1 9.0269 -3.6295 -0.4125 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691032089.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:07 Heat of formation + Delta-G solvation = 0.660653 kcal Electronic energy + Delta-G solvation = -14278.458264 eV Core-core repulsion = 11715.311797 eV Total energy + Delta-G solvation = -2563.146466 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45567 -38.45804 -35.11032 -33.98982 -32.74493 -32.04399 -29.48869 -27.79184 -24.44026 -22.88294 -21.89380 -20.28981 -17.94616 -17.33414 -17.19214 -16.39650 -15.37011 -14.90407 -14.83162 -14.36880 -14.18942 -13.81344 -13.48511 -12.78802 -12.43812 -12.31847 -12.24565 -11.07777 -10.83895 -10.81431 -10.02231 -9.84361 -9.74553 -9.54022 -9.21704 -8.83930 -8.33534 -7.73870 -6.25881 -4.28803 0.92866 1.52703 3.22415 3.26252 3.30231 3.37704 3.64503 3.94591 4.10705 4.29179 4.66037 4.84521 5.08118 5.09446 5.22453 5.49358 5.64753 5.96610 6.21168 6.56765 6.73851 6.99618 7.02625 7.30132 7.51817 7.56413 8.04154 8.29131 8.44206 8.68368 8.82138 9.33430 10.85972 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048903 B = 0.006684 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.428435 B = 4188.043599 C = 4742.247114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.694 5.694 11 C 0.560 3.440 12 O -0.567 6.567 13 C -0.259 4.259 14 C 0.003 3.997 15 C -0.251 4.251 16 C 0.172 3.828 17 N -0.558 5.558 18 C 0.453 3.547 19 N -0.830 5.830 20 H 0.268 0.732 21 H 0.028 0.972 22 H 0.023 0.977 23 H 0.397 0.603 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.156 0.844 27 H 0.426 0.574 28 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.078 -11.038 0.006 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.341 5.341 11 C 0.348 3.652 12 O -0.449 6.449 13 C -0.270 4.270 14 C -0.023 4.023 15 C -0.274 4.274 16 C 0.012 3.988 17 N -0.277 5.277 18 C 0.212 3.788 19 N -0.382 5.382 20 H 0.078 0.922 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.232 0.768 24 H 0.156 0.844 25 H 0.153 0.847 26 H 0.174 0.826 27 H 0.272 0.728 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 12.251 -10.242 -0.070 15.968 hybrid contribution -0.713 0.829 0.031 1.093 sum 11.538 -9.413 -0.039 14.891 Atomic orbital electron populations 1.69876 1.06215 1.27501 1.49180 1.24790 0.94804 0.99188 0.93789 0.86805 0.80560 0.83195 0.79057 1.19828 1.20856 1.18496 1.21066 0.88391 0.95306 1.53631 0.90202 1.19563 0.95418 0.78256 0.97022 1.46042 1.05266 1.11345 1.71404 1.17911 0.83282 0.87285 0.76770 1.90329 1.54692 1.45770 1.54129 1.20303 0.93434 0.94839 1.18404 1.21612 0.99601 0.91739 0.89349 1.21703 0.96809 0.97522 1.11357 1.22569 0.89863 0.96905 0.89477 1.67324 1.39537 0.98024 1.22823 1.18315 0.86672 0.87323 0.86530 1.43313 1.09612 1.08762 1.76503 0.92191 0.95401 0.95875 0.76784 0.84395 0.84702 0.82639 0.72849 0.77722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.96 55.43 0.77 -25.35 15 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 15 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 15 7 C -0.55 -14.75 9.83 -34.44 -0.34 -15.09 15 8 H 0.08 2.24 7.84 -52.49 -0.41 1.82 15 9 C 0.22 5.30 4.50 -5.19 -0.02 5.28 15 10 N -0.69 -14.03 5.50 -62.57 -0.34 -14.37 15 11 C 0.56 10.92 7.75 -12.52 -0.10 10.82 15 12 O -0.57 -12.19 13.68 5.28 0.07 -12.11 15 13 C -0.26 -4.21 5.91 -104.65 -0.62 -4.83 15 14 C 0.00 0.04 9.63 -38.90 -0.37 -0.33 15 15 C -0.25 -2.75 10.09 -39.49 -0.40 -3.15 15 16 C 0.17 1.95 11.16 -17.49 -0.20 1.76 15 17 N -0.56 -7.91 10.38 -12.20 -0.13 -8.04 15 18 C 0.45 7.12 7.76 -155.18 -1.20 5.91 15 19 N -0.83 -12.05 8.93 31.27 0.28 -11.77 15 20 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 21 H 0.03 0.71 7.20 -51.93 -0.37 0.33 15 22 H 0.02 0.58 7.57 -51.93 -0.39 0.19 15 23 H 0.40 7.07 6.46 -40.82 -0.26 6.80 15 24 H 0.14 1.59 6.56 -52.49 -0.34 1.25 15 25 H 0.14 1.08 8.06 -52.49 -0.42 0.65 15 26 H 0.16 1.19 8.06 -52.48 -0.42 0.77 15 27 H 0.43 6.86 5.33 -40.91 -0.22 6.65 15 28 H 0.39 4.65 8.95 -40.82 -0.37 4.29 15 LS Contribution 247.09 15.07 3.72 3.72 Total: -1.00 -31.43 247.09 -6.02 -37.45 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -2.38 Total: 11.58 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.35 Total: 2.46 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.58 Total: -59.54 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.07 Total: -12.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.43 -6.02 -37.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691032089.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.113 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds