Wall clock time and date at job start Mon Mar 30 2020 03:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32159 * 119.99874 * 2 1 4 4 C 1.32128 * 119.99754 * 180.27593 * 3 2 1 5 5 C 1.38394 * 119.99699 * 359.72724 * 4 3 2 6 6 N 1.32120 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.32159 * 119.99977 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00075 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47646 * 89.99510 * 8 7 6 10 10 C 1.34779 * 120.00515 * 180.02562 * 9 8 7 11 11 O 1.21691 * 119.99278 * 359.97438 * 10 9 8 12 12 C 1.46369 * 120.00306 * 180.02562 * 10 9 8 13 13 H 1.08007 * 119.99796 * 353.93118 * 12 10 9 14 14 C 1.40048 * 120.00067 * 173.93900 * 12 10 9 15 15 N 1.30667 * 119.99907 * 6.14463 * 14 12 10 16 16 Si 1.86806 * 119.99766 * 186.14644 * 14 12 10 17 17 H 1.48504 * 109.46849 * 94.98113 * 16 14 12 18 18 H 1.48496 * 109.46851 * 214.97818 * 16 14 12 19 19 H 1.48496 * 109.47083 * 334.98315 * 16 14 12 20 20 H 1.08998 * 109.47282 * 270.24698 * 1 2 3 21 21 H 1.09008 * 109.46789 * 30.25203 * 1 2 3 22 22 H 1.09004 * 109.47045 * 150.24770 * 1 2 3 23 23 H 1.07992 * 120.00216 * 179.71030 * 4 3 2 24 24 H 1.08004 * 119.99843 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47124 * 210.00122 * 8 7 6 26 26 H 1.09008 * 109.47143 * 329.99283 * 8 7 6 27 27 H 0.97003 * 119.99952 * 0.02562 * 9 8 7 28 28 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0056 6 7 3.5203 -1.1982 -0.0006 7 6 2.1987 -1.1981 0.0038 8 6 1.4451 -2.5031 0.0089 9 7 1.2057 -2.9235 1.3917 10 6 0.5443 -4.0708 1.6424 11 8 0.1458 -4.7573 0.7200 12 6 0.3046 -4.4906 3.0240 13 1 0.7409 -3.9345 3.8407 14 6 -0.4903 -5.6132 3.2868 15 7 -0.9187 -6.3558 2.3007 16 14 -0.9380 -6.0490 5.0473 17 1 -2.2657 -5.4716 5.3778 18 1 -0.9903 -7.5259 5.1936 19 1 0.0858 -5.4960 5.9698 20 1 -0.3634 0.0044 1.0276 21 1 -0.3633 0.8878 -0.5178 22 1 -0.3633 -0.8922 -0.5100 23 1 4.0290 2.0797 -0.0102 24 1 5.2610 -0.0541 -0.0105 25 1 0.4910 -2.3737 -0.5020 26 1 2.0324 -3.2638 -0.5056 27 1 1.5231 -2.3761 2.1269 28 1 -1.4696 -7.1331 2.4828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700052673.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:07 Heat of formation + Delta-G solvation = 4.656103 kcal Electronic energy + Delta-G solvation = -14300.112261 eV Core-core repulsion = 11737.139050 eV Total energy + Delta-G solvation = -2562.973211 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11437 -37.32608 -34.56807 -34.22602 -32.53367 -31.60645 -28.20752 -27.28489 -25.53436 -22.98737 -22.28504 -19.74228 -17.75269 -17.52557 -16.26515 -15.48847 -15.37821 -14.98990 -14.12986 -13.91283 -13.61075 -13.01657 -12.76320 -12.49431 -12.31519 -11.84045 -11.50979 -11.27268 -11.20594 -10.95242 -10.86827 -10.47899 -10.23653 -9.09203 -8.97301 -8.86188 -7.64749 -7.57611 -6.21696 -4.65842 0.78677 1.18486 3.13454 3.20799 3.24470 3.67210 4.05798 4.11537 4.22787 4.50795 4.57026 4.79015 5.04434 5.15833 5.28428 5.41719 5.65351 5.70926 5.81625 6.05290 6.18969 6.35881 6.54469 7.35275 7.42272 7.85024 7.86877 8.00564 8.29801 9.00604 9.46480 10.56342 10.74269 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.047618 B = 0.006239 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.872768 B = 4486.555217 C = 4510.217966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.094 3.906 3 N -0.444 5.444 4 C 0.045 3.955 5 C 0.038 3.962 6 N -0.423 5.423 7 C 0.079 3.921 8 C 0.181 3.819 9 N -0.758 5.758 10 C 0.557 3.443 11 O -0.579 6.579 12 C -0.544 4.544 13 H 0.068 0.932 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.908 3.092 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.087 0.913 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.167 0.833 24 H 0.167 0.833 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.380 0.620 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.550 12.655 -2.175 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.047 4.047 3 N -0.159 5.159 4 C -0.115 4.115 5 C -0.122 4.122 6 N -0.138 5.138 7 C -0.063 4.063 8 C 0.056 3.944 9 N -0.415 5.415 10 C 0.361 3.639 11 O -0.461 6.461 12 C -0.581 4.581 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.733 3.267 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.189 1.189 20 H 0.105 0.895 21 H 0.095 0.905 22 H 0.107 0.893 23 H 0.184 0.816 24 H 0.184 0.816 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.211 0.789 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.141 11.950 -2.944 13.338 hybrid contribution 0.242 0.214 1.221 1.263 sum 5.383 12.164 -1.723 13.413 Atomic orbital electron populations 1.20822 0.87415 1.03935 1.04146 1.22197 0.98645 0.88812 0.95026 1.68304 1.08894 1.29256 1.09456 1.23717 0.90930 0.99725 0.97155 1.23762 1.01828 0.88861 0.97728 1.68355 1.08432 1.29656 1.07347 1.22444 0.90493 0.97059 0.96257 1.19754 0.97201 0.88940 0.88529 1.46138 1.64367 1.27199 1.03759 1.18240 0.76827 0.78148 0.90636 1.90607 1.54610 1.54210 1.46688 1.20848 1.33440 1.12927 0.90861 0.91393 1.25697 0.94306 0.94959 0.98212 1.70021 1.25574 1.11819 1.32094 0.86348 0.79367 0.78021 0.82964 1.19775 1.20428 1.18910 0.89455 0.90514 0.89336 0.81628 0.81576 0.90798 0.91251 0.78916 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.79 36.01 0.35 -1.05 15 2 C 0.09 1.42 6.79 -82.41 -0.56 0.86 15 3 N -0.44 -6.28 10.42 -9.29 -0.10 -6.38 15 4 C 0.05 0.52 11.23 -17.37 -0.19 0.32 15 5 C 0.04 0.47 11.23 -17.37 -0.19 0.27 15 6 N -0.42 -6.86 10.42 -9.29 -0.10 -6.96 15 7 C 0.08 1.32 6.15 -82.41 -0.51 0.81 15 8 C 0.18 3.56 5.58 -5.20 -0.03 3.53 15 9 N -0.76 -17.09 5.54 -62.90 -0.35 -17.43 15 10 C 0.56 15.74 7.74 -12.99 -0.10 15.64 15 11 O -0.58 -18.51 15.05 5.20 0.08 -18.44 15 12 C -0.54 -15.31 9.53 -35.63 -0.34 -15.65 15 13 H 0.07 1.77 7.86 -52.48 -0.41 1.35 15 14 C 0.09 2.45 5.49 -17.37 -0.10 2.35 15 15 N -0.77 -22.81 11.85 55.55 0.66 -22.15 15 16 Si 0.91 20.05 29.56 -169.99 -5.03 15.02 15 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 19 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 20 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.08 0.88 8.14 -51.92 -0.42 0.46 15 22 H 0.09 1.20 5.95 -51.93 -0.31 0.89 15 23 H 0.17 1.24 8.06 -52.49 -0.42 0.82 15 24 H 0.17 1.41 8.06 -52.48 -0.42 0.99 15 25 H 0.07 1.41 5.94 -51.93 -0.31 1.11 15 26 H 0.07 1.48 8.14 -51.92 -0.42 1.06 15 27 H 0.38 7.86 8.44 -40.82 -0.34 7.52 15 28 H 0.27 7.24 8.29 -40.82 -0.34 6.90 15 LS Contribution 254.72 15.07 3.84 3.84 Total: -1.00 -34.67 254.72 -5.28 -39.96 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -2.62 Total: 5.44 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.67 Total: 7.10 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.12 Total: -52.92 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.08 Total: -18.44 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.67 -5.28 -39.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700052673.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.612 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds