Wall clock time and date at job start Mon Mar 30 2020 03:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32159 * 119.99874 * 2 1 4 4 C 1.32128 * 119.99754 * 180.27593 * 3 2 1 5 5 C 1.38394 * 119.99699 * 359.72724 * 4 3 2 6 6 N 1.32120 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.32159 * 119.99977 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00075 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47646 * 89.99510 * 8 7 6 10 10 C 1.34779 * 120.00515 * 180.02562 * 9 8 7 11 11 O 1.21691 * 119.99278 * 359.97438 * 10 9 8 12 12 C 1.46369 * 120.00306 * 180.02562 * 10 9 8 13 13 H 1.08007 * 119.99796 * 353.93118 * 12 10 9 14 14 C 1.40048 * 120.00067 * 173.93900 * 12 10 9 15 15 N 1.30667 * 119.99907 * 6.14463 * 14 12 10 16 16 Si 1.86806 * 119.99766 * 186.14644 * 14 12 10 17 17 H 1.48504 * 109.46849 * 94.98113 * 16 14 12 18 18 H 1.48496 * 109.46851 * 214.97818 * 16 14 12 19 19 H 1.48496 * 109.47083 * 334.98315 * 16 14 12 20 20 H 1.08998 * 109.47282 * 270.24698 * 1 2 3 21 21 H 1.09008 * 109.46789 * 30.25203 * 1 2 3 22 22 H 1.09004 * 109.47045 * 150.24770 * 1 2 3 23 23 H 1.07992 * 120.00216 * 179.71030 * 4 3 2 24 24 H 1.08004 * 119.99843 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47124 * 210.00122 * 8 7 6 26 26 H 1.09008 * 109.47143 * 329.99283 * 8 7 6 27 27 H 0.97003 * 119.99952 * 0.02562 * 9 8 7 28 28 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0056 6 7 3.5203 -1.1982 -0.0006 7 6 2.1987 -1.1981 0.0038 8 6 1.4451 -2.5031 0.0089 9 7 1.2057 -2.9235 1.3917 10 6 0.5443 -4.0708 1.6424 11 8 0.1458 -4.7573 0.7200 12 6 0.3046 -4.4906 3.0240 13 1 0.7409 -3.9345 3.8407 14 6 -0.4903 -5.6132 3.2868 15 7 -0.9187 -6.3558 2.3007 16 14 -0.9380 -6.0490 5.0473 17 1 -2.2657 -5.4716 5.3778 18 1 -0.9903 -7.5259 5.1936 19 1 0.0858 -5.4960 5.9698 20 1 -0.3634 0.0044 1.0276 21 1 -0.3633 0.8878 -0.5178 22 1 -0.3633 -0.8922 -0.5100 23 1 4.0290 2.0797 -0.0102 24 1 5.2610 -0.0541 -0.0105 25 1 0.4910 -2.3737 -0.5020 26 1 2.0324 -3.2638 -0.5056 27 1 1.5231 -2.3761 2.1269 28 1 -1.4696 -7.1331 2.4828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700052673.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:06 Heat of formation + Delta-G solvation = -23.107799 kcal Electronic energy + Delta-G solvation = -14301.316194 eV Core-core repulsion = 11737.139050 eV Total energy + Delta-G solvation = -2564.177144 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.23028 -39.37645 -36.04813 -35.48042 -34.59472 -33.24614 -29.57534 -28.81800 -27.28242 -24.19959 -23.51409 -21.77398 -19.46619 -18.88519 -17.60537 -17.26452 -16.74653 -16.32817 -15.73148 -15.54160 -15.33847 -14.45186 -14.11417 -13.90543 -13.65467 -13.45895 -13.10647 -12.83427 -12.71487 -12.60618 -12.49504 -12.10250 -12.00372 -10.93314 -10.27057 -10.07089 -9.80838 -9.55515 -8.30854 -6.86536 -0.29329 0.09370 1.41213 1.42036 1.58168 2.24437 2.45557 2.56936 2.95520 3.14141 3.30113 3.45499 3.60125 3.69601 4.09181 4.35204 4.39127 4.49861 4.61659 4.74622 4.84792 5.07355 5.31768 5.43916 5.83408 6.08571 6.21452 6.29292 6.78885 6.85838 7.45505 8.44915 8.65074 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.047618 B = 0.006239 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.872768 B = 4486.555217 C = 4510.217966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.090 3.910 3 N -0.456 5.456 4 C 0.065 3.935 5 C 0.043 3.957 6 N -0.454 5.454 7 C 0.054 3.946 8 C 0.189 3.811 9 N -0.744 5.744 10 C 0.542 3.458 11 O -0.628 6.628 12 C -0.572 4.572 13 H 0.085 0.915 14 C 0.031 3.969 15 N -0.819 5.819 16 Si 0.999 3.001 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.251 1.251 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.077 0.923 23 H 0.216 0.784 24 H 0.208 0.792 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.390 0.610 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.659 14.706 -0.670 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.049 4.049 3 N -0.172 5.172 4 C -0.096 4.096 5 C -0.118 4.118 6 N -0.169 5.169 7 C -0.085 4.085 8 C 0.063 3.937 9 N -0.399 5.399 10 C 0.347 3.653 11 O -0.515 6.515 12 C -0.609 4.609 13 H 0.103 0.897 14 C -0.185 4.185 15 N -0.448 5.448 16 Si 0.818 3.182 17 H -0.186 1.186 18 H -0.197 1.197 19 H -0.174 1.174 20 H 0.104 0.896 21 H 0.114 0.886 22 H 0.095 0.905 23 H 0.232 0.768 24 H 0.225 0.775 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.223 0.777 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.248 14.038 -1.440 15.433 hybrid contribution 0.067 -0.275 0.673 0.730 sum 6.315 13.763 -0.766 15.162 Atomic orbital electron populations 1.20808 0.86850 1.04299 1.04130 1.22218 0.99190 0.88559 0.94942 1.68415 1.10339 1.28320 1.10084 1.24556 0.90092 1.01445 0.93537 1.24484 1.03612 0.87839 0.95900 1.68247 1.08307 1.32188 1.08202 1.21843 0.90997 0.95832 0.99814 1.19616 0.97408 0.90262 0.86368 1.45745 1.62811 1.25760 1.05581 1.18583 0.76957 0.79118 0.90652 1.90560 1.56791 1.56169 1.47963 1.21368 1.34240 1.13903 0.91346 0.89700 1.26953 0.93443 0.94247 1.03845 1.70177 1.26462 1.12669 1.35486 0.84991 0.79528 0.77920 0.75745 1.18570 1.19691 1.17420 0.89608 0.88602 0.90461 0.76788 0.77541 0.90917 0.93820 0.77742 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.72 9.79 71.24 0.70 -2.02 15 2 C 0.09 2.63 6.79 42.53 0.29 2.92 15 3 N -0.46 -11.70 10.42 -183.29 -1.91 -13.61 15 4 C 0.07 1.23 11.23 84.69 0.95 2.18 15 5 C 0.04 0.91 11.23 84.69 0.95 1.86 15 6 N -0.45 -14.27 10.42 -183.29 -1.91 -16.18 15 7 C 0.05 1.82 6.15 42.53 0.26 2.08 15 8 C 0.19 7.78 5.58 85.63 0.48 8.26 15 9 N -0.74 -34.68 5.54 -471.14 -2.61 -37.29 15 10 C 0.54 31.80 7.74 86.36 0.67 32.46 15 11 O -0.63 -42.21 15.05 -4.32 -0.06 -42.27 15 12 C -0.57 -32.67 9.53 24.83 0.24 -32.44 15 13 H 0.08 4.39 7.86 -2.91 -0.02 4.37 15 14 C 0.03 1.71 5.49 85.31 0.47 2.18 15 15 N -0.82 -50.03 11.85 21.83 0.26 -49.77 15 16 Si 1.00 40.93 29.56 68.60 2.03 42.95 15 17 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 18 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 19 H -0.25 -9.61 7.11 99.48 0.71 -8.90 15 20 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.10 2.10 8.14 -2.38 -0.02 2.08 15 22 H 0.08 2.18 5.95 -2.38 -0.01 2.17 15 23 H 0.22 1.90 8.06 -2.91 -0.02 1.88 15 24 H 0.21 2.54 8.06 -2.91 -0.02 2.51 15 25 H 0.07 2.97 5.94 -2.39 -0.01 2.96 15 26 H 0.04 1.99 8.14 -2.38 -0.02 1.97 15 27 H 0.39 16.42 8.44 -92.71 -0.78 15.64 15 28 H 0.28 15.20 8.29 -92.71 -0.77 14.43 15 Total: -1.00 -78.06 254.72 1.20 -76.85 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.41 Total: 21.84 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 5.00 Total: 17.47 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -6.17 Total: -116.85 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.06 Total: -42.27 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -78.06 1.20 -76.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700052673.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.747 kcal (2) G-P(sol) polarization free energy of solvation -78.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds