Wall clock time and date at job start Mon Mar 30 2020 02:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35923 * 117.00216 * 2 1 4 4 C 1.38899 * 120.38767 * 0.02562 * 3 2 1 5 5 N 1.31903 * 121.05741 * 179.97438 * 4 3 2 6 6 C 1.31635 * 121.97276 * 359.97438 * 5 4 3 7 7 C 1.39800 * 120.65237 * 0.02562 * 6 5 4 8 8 C 1.47180 * 120.56247 * 179.97438 * 7 6 5 9 9 O 1.21256 * 120.00160 * 180.02562 * 8 7 6 10 10 C 1.50703 * 119.99824 * 0.02562 * 8 7 6 11 11 C 1.50695 * 109.47387 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99636 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00333 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00130 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99860 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46992 * 90.00046 * 15 13 11 17 17 H 1.48494 * 109.47009 * 209.99971 * 15 13 11 18 18 H 1.48497 * 109.47168 * 330.00172 * 15 13 11 19 19 C 1.38768 * 120.39420 * 180.02562 * 3 2 1 20 20 H 1.09007 * 109.46785 * 60.00260 * 1 2 3 21 21 H 1.08996 * 109.47168 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46848 * 300.00561 * 1 2 3 23 23 H 1.07993 * 119.46754 * 359.95205 * 4 3 2 24 24 H 1.08002 * 119.67260 * 180.02562 * 6 5 4 25 25 H 1.08999 * 109.46784 * 300.00044 * 10 8 7 26 26 H 1.09003 * 109.47017 * 59.99972 * 10 8 7 27 27 H 0.96997 * 120.00208 * 180.02562 * 14 13 11 28 28 H 1.08011 * 120.88958 * 0.29068 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2976 2.3811 0.0005 5 7 1.8827 3.5632 0.0010 6 6 3.1927 3.6926 0.0016 7 6 4.0202 2.5658 0.0011 8 6 5.4847 2.7128 0.0011 9 8 6.1928 1.7285 0.0002 10 6 6.1040 4.0866 0.0023 11 6 7.6057 3.9607 0.0014 12 1 8.0656 2.9835 0.0006 13 6 8.3925 5.0929 0.0017 14 7 9.7030 4.9829 0.0015 15 14 7.5970 6.7831 0.0024 16 1 7.3865 7.2304 1.4027 17 1 8.4832 7.7475 -0.6974 18 1 6.2891 6.7149 -0.6974 19 6 3.4314 1.2932 -0.0005 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.2193 2.3219 0.0002 24 1 3.6326 4.6790 0.0024 25 1 5.7849 4.6298 -0.8872 26 1 5.7850 4.6283 0.8928 27 1 10.2566 5.7794 0.0020 28 1 4.0398 0.4007 -0.0057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700098769.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:01 Heat of formation + Delta-G solvation = -38.440277 kcal Electronic energy + Delta-G solvation = -14133.063143 eV Core-core repulsion = 11535.928382 eV Total energy + Delta-G solvation = -2597.134761 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.71854 -38.77126 -37.69004 -32.95178 -32.40573 -31.10069 -29.38576 -27.76184 -24.89548 -23.33071 -22.42250 -19.58063 -17.86689 -17.04989 -16.84230 -16.52137 -16.06315 -14.95777 -14.65702 -14.37604 -14.17051 -13.51658 -13.33243 -13.09994 -12.64638 -12.31974 -12.03975 -11.71978 -11.61966 -10.93562 -10.61511 -10.00683 -9.69089 -9.59964 -9.32956 -8.79033 -8.62230 -8.55048 -6.07441 -4.08486 0.65096 1.25162 2.93395 2.96095 3.26223 3.32467 3.34699 3.92326 4.32494 4.38039 4.48619 4.68180 4.81396 4.86390 5.02961 5.09072 5.17739 5.23638 5.38793 5.82495 6.01097 6.32129 6.43002 6.60744 6.85032 7.04109 7.55022 7.84072 8.27812 8.51017 9.07783 9.50347 11.05448 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.055030 B = 0.006451 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.695154 B = 4339.253389 C = 4827.502424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.062 3.938 4 C 0.031 3.969 5 N -0.459 5.459 6 C 0.108 3.892 7 C -0.165 4.165 8 C 0.402 3.598 9 O -0.437 6.437 10 C -0.056 4.056 11 C -0.523 4.523 12 H 0.090 0.910 13 C 0.070 3.930 14 N -0.896 5.896 15 Si 0.874 3.126 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.264 1.264 19 C -0.061 4.061 20 H 0.057 0.943 21 H 0.102 0.898 22 H 0.057 0.943 23 H 0.158 0.842 24 H 0.171 0.829 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.265 0.735 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.327 -4.837 -0.022 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.014 3.986 4 C -0.126 4.126 5 N -0.168 5.168 6 C -0.051 4.051 7 C -0.168 4.168 8 C 0.277 3.723 9 O -0.310 6.310 10 C -0.093 4.093 11 C -0.560 4.560 12 H 0.108 0.892 13 C -0.132 4.132 14 N -0.534 5.534 15 Si 0.700 3.300 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.188 1.188 19 C -0.087 4.087 20 H 0.076 0.924 21 H 0.120 0.880 22 H 0.076 0.924 23 H 0.175 0.825 24 H 0.188 0.812 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.217 -4.731 -0.026 19.791 hybrid contribution -0.156 0.370 0.016 0.402 sum -19.373 -4.362 -0.010 19.858 Atomic orbital electron populations 1.23108 0.78195 1.04279 1.01492 1.86107 1.21458 1.25950 1.88879 1.19948 0.92984 0.85811 0.99811 1.23038 1.00473 0.87343 1.01796 1.67559 1.12486 1.25782 1.10947 1.23177 0.88037 0.99175 0.94709 1.22054 0.98798 0.93428 1.02484 1.22798 0.85060 0.93352 0.71112 1.90431 1.63951 1.41989 1.34639 1.20016 0.99152 0.91131 0.98977 1.20991 0.87454 0.96118 1.51477 0.89187 1.24982 0.94747 0.98912 0.94509 1.69893 1.03706 1.29515 1.50287 0.86893 0.79858 0.84509 0.78721 1.19998 1.21079 1.18823 1.21245 0.91476 0.98942 0.97040 0.92443 0.87952 0.92448 0.82494 0.81158 0.92592 0.93029 0.92517 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.16 15 2 O -0.31 -3.70 10.51 -19.50 -0.20 -3.90 15 3 C 0.06 0.84 6.70 -39.14 -0.26 0.57 15 4 C 0.03 0.39 10.21 -17.28 -0.18 0.22 15 5 N -0.46 -6.79 10.34 -12.72 -0.13 -6.92 15 6 C 0.11 1.68 10.64 -17.05 -0.18 1.50 15 7 C -0.16 -2.84 5.88 -104.94 -0.62 -3.46 15 8 C 0.40 8.53 7.12 -30.68 -0.22 8.31 15 9 O -0.44 -10.64 15.52 5.58 0.09 -10.56 15 10 C -0.06 -1.27 3.16 -29.04 -0.09 -1.36 15 11 C -0.52 -14.93 9.48 -34.44 -0.33 -15.25 15 12 H 0.09 2.90 7.00 -52.48 -0.37 2.53 15 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 14 N -0.90 -27.49 13.96 55.43 0.77 -26.72 15 15 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 15 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 18 H -0.26 -5.69 6.54 56.52 0.37 -5.32 15 19 C -0.06 -0.96 9.67 -38.64 -0.37 -1.34 15 20 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 15 21 H 0.10 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 15 23 H 0.16 1.43 6.30 -52.49 -0.33 1.10 15 24 H 0.17 2.43 7.07 -52.49 -0.37 2.06 15 25 H 0.06 1.20 7.15 -51.93 -0.37 0.83 15 26 H 0.05 1.09 7.53 -51.93 -0.39 0.70 15 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 28 H 0.15 2.39 7.73 -52.48 -0.41 1.98 15 LS Contribution 251.27 15.07 3.79 3.79 Total: -1.00 -33.05 251.27 -4.33 -37.38 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -2.62 Total: -1.18 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.35 Total: -7.73 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.64 Total: -33.64 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.12 Total: -14.46 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.05 -4.33 -37.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700098769.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.055 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds