Wall clock time and date at job start Mon Mar 30 2020 04:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40041 * 126.15743 * 2 1 4 4 C 1.30999 * 108.87331 * 180.30326 * 3 2 1 5 5 C 1.39157 * 108.83967 * 359.73793 * 4 3 2 6 6 C 1.36833 * 126.15170 * 179.85075 * 2 1 3 7 7 C 1.46356 * 126.52570 * 359.97129 * 6 2 1 8 8 C 1.35423 * 119.99819 * 57.65848 * 7 6 2 9 9 C 1.41661 * 119.99890 * 6.52720 * 8 7 6 10 10 O 1.21803 * 120.00418 * 5.80609 * 9 8 7 11 11 N 1.34780 * 119.99958 * 185.80139 * 9 8 7 12 12 C 1.36715 * 119.99951 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00281 * 359.73200 * 12 11 9 14 14 C 1.39115 * 120.00104 * 179.72604 * 12 11 9 15 15 N 1.31330 * 120.00104 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99765 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.46856 * 89.99901 * 16 14 12 18 18 H 1.48498 * 109.47348 * 210.00063 * 16 14 12 19 19 H 1.48505 * 109.47045 * 330.00213 * 16 14 12 20 20 H 1.08995 * 109.47107 * 265.06714 * 1 2 3 21 21 H 1.09001 * 109.46510 * 25.06364 * 1 2 3 22 22 H 1.08997 * 109.47058 * 145.06299 * 1 2 3 23 23 H 1.07993 * 125.57963 * 179.75660 * 4 3 2 24 24 H 1.08007 * 126.18303 * 180.02562 * 5 4 3 25 25 H 1.08001 * 119.99838 * 237.66694 * 7 6 2 26 26 H 1.07997 * 120.00170 * 186.52381 * 8 7 6 27 27 H 0.96994 * 119.99985 * 359.72991 * 11 9 8 28 28 H 0.96998 * 119.99856 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2913 1.1307 0.0000 4 6 3.5421 0.7415 -0.0066 5 6 3.5799 -0.6496 -0.0050 6 6 2.2722 -1.1049 0.0029 7 6 1.8365 -2.5020 0.0071 8 6 1.0355 -2.9645 -0.9821 9 6 0.7319 -2.1383 -2.0921 10 8 1.2737 -1.0538 -2.2105 11 7 -0.1564 -2.5524 -3.0174 12 6 -0.4498 -1.7548 -4.0883 13 1 0.0270 -0.7912 -4.1907 14 6 -1.3624 -2.1846 -5.0463 15 7 -1.6438 -1.4187 -6.0754 16 14 -2.1874 -3.8511 -4.8690 17 1 -3.4467 -3.7002 -4.0964 18 1 -2.4950 -4.3970 -6.2153 19 1 -1.2765 -4.7809 -4.1541 20 1 -0.3633 -0.0884 1.0238 21 1 -0.3632 0.9309 -0.4354 22 1 -0.3633 -0.8424 -0.5885 23 1 4.4030 1.3935 -0.0119 24 1 4.4686 -1.2633 -0.0089 25 1 2.1536 -3.1642 0.7992 26 1 0.6282 -3.9631 -0.9248 27 1 -0.5848 -3.4176 -2.9252 28 1 -2.2798 -1.7185 -6.7435 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701217309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:45 Heat of formation + Delta-G solvation = 52.676297 kcal Electronic energy + Delta-G solvation = -14796.395272 eV Core-core repulsion = 12235.504373 eV Total energy + Delta-G solvation = -2560.890899 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.83607 -40.29500 -36.29466 -34.57361 -33.88941 -33.55977 -30.30367 -27.67848 -27.26810 -24.16192 -21.80855 -21.67153 -20.90604 -19.41893 -18.23450 -17.17941 -16.52737 -16.31993 -15.66755 -15.47119 -14.98812 -14.83991 -14.44632 -14.36769 -13.86281 -13.42959 -13.21740 -13.06102 -12.95189 -12.46286 -12.02039 -11.58551 -11.51123 -10.89598 -10.43751 -10.27321 -9.69655 -9.12106 -8.48984 -6.03482 0.00113 1.25995 1.28739 1.38347 1.42932 1.87192 2.06601 2.18612 2.46585 3.06405 3.23347 3.77238 3.80435 4.26892 4.31964 4.38526 4.61197 4.63066 4.78720 4.87309 5.07376 5.21841 5.35444 5.57870 5.92121 5.94393 6.28349 6.53156 6.83831 6.95010 7.34028 7.95478 8.68281 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045927 B = 0.008062 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.521275 B = 3472.437276 C = 3711.651772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.347 5.347 3 N -0.349 5.349 4 C 0.030 3.970 5 C -0.284 4.284 6 C 0.122 3.878 7 C -0.028 4.028 8 C -0.178 4.178 9 C 0.453 3.547 10 O -0.611 6.611 11 N -0.573 5.573 12 C -0.322 4.322 13 H 0.052 0.948 14 C -0.014 4.014 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.254 1.254 18 H -0.276 1.276 19 H -0.229 1.229 20 H 0.099 0.901 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.204 0.796 24 H 0.167 0.833 25 H 0.199 0.801 26 H 0.176 0.824 27 H 0.391 0.609 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 -8.741 14.111 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.128 5.128 3 N -0.173 5.173 4 C -0.153 4.153 5 C -0.313 4.313 6 C -0.007 4.007 7 C -0.050 4.050 8 C -0.200 4.200 9 C 0.246 3.754 10 O -0.499 6.499 11 N -0.212 5.212 12 C -0.452 4.452 13 H 0.070 0.930 14 C -0.213 4.213 15 N -0.566 5.566 16 Si 0.786 3.214 17 H -0.178 1.178 18 H -0.201 1.201 19 H -0.152 1.152 20 H 0.117 0.883 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.221 0.779 24 H 0.185 0.815 25 H 0.215 0.785 26 H 0.193 0.807 27 H 0.227 0.773 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.498 -6.940 13.808 15.654 hybrid contribution -0.134 -0.873 -0.975 1.316 sum 2.364 -7.812 12.832 15.208 Atomic orbital electron populations 1.21808 0.74629 1.03800 1.03055 1.48719 1.06389 1.02934 1.54797 1.77056 1.03158 1.09889 1.27165 1.23986 0.95031 0.96138 1.00114 1.21946 0.95993 0.94764 1.18556 1.20553 0.91283 0.89540 0.99288 1.22152 0.94009 0.90196 0.98662 1.22517 1.01520 1.02229 0.93711 1.17717 0.83129 0.88556 0.86040 1.90835 1.54867 1.25126 1.79035 1.42057 1.38911 1.18554 1.21677 1.18959 1.24000 1.01210 1.01000 0.92983 1.26225 0.97307 1.03640 0.94168 1.69773 1.34495 1.39936 1.12405 0.85348 0.79722 0.76974 0.79403 1.17816 1.20087 1.15185 0.88287 0.91402 0.90755 0.77947 0.81528 0.78460 0.80677 0.77327 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.83 10.39 127.77 1.33 5.16 15 2 N -0.35 -13.70 3.02 -356.61 -1.08 -14.78 15 3 N -0.35 -14.49 12.54 -57.41 -0.72 -15.21 15 4 C 0.03 1.04 11.96 85.04 1.02 2.05 15 5 C -0.28 -9.39 10.84 22.55 0.24 -9.15 15 6 C 0.12 4.27 4.62 40.53 0.19 4.45 15 7 C -0.03 -0.72 9.87 23.73 0.23 -0.49 15 8 C -0.18 -5.13 9.32 22.46 0.21 -4.92 15 9 C 0.45 19.66 5.58 85.09 0.47 20.13 15 10 O -0.61 -32.69 11.72 -4.68 -0.05 -32.75 15 11 N -0.57 -26.02 5.07 -315.09 -1.60 -27.62 15 12 C -0.32 -18.45 10.16 84.14 0.85 -17.60 15 13 H 0.05 3.63 7.38 -2.91 -0.02 3.60 15 14 C -0.01 -0.73 5.50 84.98 0.47 -0.27 15 15 N -0.93 -55.06 13.95 21.69 0.30 -54.75 15 16 Si 0.97 37.32 27.74 68.60 1.90 39.22 15 17 H -0.25 -9.21 7.11 99.48 0.71 -8.50 15 18 H -0.28 -10.69 7.11 99.48 0.71 -9.98 15 19 H -0.23 -7.33 6.52 99.48 0.65 -6.68 15 20 H 0.10 2.62 8.14 -2.39 -0.02 2.60 15 21 H 0.07 2.56 8.14 -2.39 -0.02 2.54 15 22 H 0.07 2.77 5.08 -2.39 -0.01 2.76 15 23 H 0.20 5.36 8.06 -2.91 -0.02 5.34 15 24 H 0.17 4.35 8.06 -2.91 -0.02 4.33 15 25 H 0.20 2.84 8.06 -2.91 -0.02 2.81 15 26 H 0.18 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.39 14.47 5.72 -92.71 -0.53 13.94 15 28 H 0.28 15.23 8.31 -92.71 -0.77 14.46 15 Total: -1.00 -80.41 248.00 4.37 -76.04 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.60 Total: 30.48 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.02 Total: -0.63 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -3.09 Total: -112.36 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.05 Total: -32.75 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 1.90 Total: 39.22 kcal Total: -80.41 4.37 -76.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701217309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.716 kcal (2) G-P(sol) polarization free energy of solvation -80.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds