Wall clock time and date at job start Mon Mar 30 2020 04:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40038 * 126.15760 * 2 1 4 4 C 1.30996 * 108.87474 * 180.02562 * 3 2 1 5 5 C 1.39159 * 108.84181 * 0.02562 * 4 3 2 6 6 C 1.36837 * 126.15086 * 179.69489 * 2 1 3 7 7 C 1.46345 * 126.52556 * 359.96873 * 6 2 1 8 8 C 1.35424 * 120.00480 * 185.14469 * 7 6 2 9 9 C 1.41657 * 120.00390 * 185.18312 * 8 7 6 10 10 O 1.21806 * 119.99995 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00148 * 179.97438 * 9 8 7 12 12 C 1.36711 * 120.00083 * 180.02562 * 11 9 8 13 13 H 1.08007 * 120.00047 * 0.02562 * 12 11 9 14 14 C 1.39113 * 120.00172 * 180.02562 * 12 11 9 15 15 N 1.31332 * 119.99444 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00151 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47399 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47005 * 120.00214 * 16 14 12 19 19 H 1.48502 * 109.47293 * 240.00136 * 16 14 12 20 20 H 1.08997 * 109.47008 * 85.25407 * 1 2 3 21 21 H 1.09004 * 109.46878 * 205.25465 * 1 2 3 22 22 H 1.08999 * 109.46970 * 325.25841 * 1 2 3 23 23 H 1.08001 * 125.58118 * 179.97438 * 4 3 2 24 24 H 1.07999 * 126.17889 * 180.02562 * 5 4 3 25 25 H 1.08004 * 119.99842 * 5.13878 * 7 6 2 26 26 H 1.08007 * 119.99628 * 5.18989 * 8 7 6 27 27 H 0.96995 * 119.99395 * 0.02562 * 11 9 8 28 28 H 0.97002 * 119.99426 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2913 1.1307 0.0000 4 6 3.5421 0.7415 -0.0006 5 6 3.5799 -0.6496 -0.0015 6 6 2.2723 -1.1049 0.0059 7 6 1.8365 -2.5019 0.0140 8 6 2.7499 -3.4956 0.1243 9 6 2.3412 -4.8481 0.0220 10 8 1.1682 -5.1173 -0.1657 11 7 3.2504 -5.8370 0.1313 12 6 2.8561 -7.1422 0.0321 13 1 1.8159 -7.3809 -0.1344 14 6 3.7944 -8.1630 0.1454 15 7 5.0591 -7.8727 0.3484 16 14 3.2554 -9.9463 0.0105 17 1 1.7890 -10.0046 -0.2161 18 1 3.9577 -10.5909 -1.1283 19 1 3.5913 -10.6615 1.2679 20 1 -0.3633 0.0850 -1.0241 21 1 -0.3633 -0.9295 0.4385 22 1 -0.3633 0.8445 0.5856 23 1 4.4031 1.3935 -0.0011 24 1 4.4687 -1.2632 -0.0018 25 1 0.7863 -2.7405 -0.0680 26 1 3.7901 -3.2569 0.2905 27 1 4.1845 -5.6226 0.2805 28 1 5.7134 -8.5844 0.4271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701217310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:49 Heat of formation + Delta-G solvation = 32.067516 kcal Electronic energy + Delta-G solvation = -13861.500646 eV Core-core repulsion = 11299.716084 eV Total energy + Delta-G solvation = -2561.784563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.90154 -40.30723 -36.25184 -34.80292 -34.05068 -33.37003 -30.21803 -27.71224 -27.35094 -24.66907 -22.17008 -21.19486 -20.30783 -19.34265 -18.53595 -17.14900 -16.62638 -16.35920 -15.93007 -15.45900 -15.40662 -14.95730 -14.52116 -14.07117 -13.62011 -13.53675 -13.24703 -12.98623 -12.67484 -12.47835 -12.10813 -11.73128 -11.67576 -11.43285 -10.52141 -10.13014 -9.91447 -9.22104 -8.58106 -5.98157 -0.33418 1.24265 1.42562 1.45902 1.53379 1.57504 1.94899 2.27344 2.54373 3.21825 3.28259 3.66309 3.77204 4.04045 4.30408 4.38033 4.53002 4.60270 4.66466 4.79923 4.92732 5.26473 5.34989 5.38533 5.72631 5.94566 5.98612 6.50790 6.69677 7.02907 7.44003 8.03375 8.58684 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.063732 B = 0.005184 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.233471 B = 5400.420276 C = 5819.571044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.377 5.377 3 N -0.321 5.321 4 C 0.044 3.956 5 C -0.257 4.257 6 C 0.094 3.906 7 C -0.044 4.044 8 C -0.144 4.144 9 C 0.448 3.552 10 O -0.650 6.650 11 N -0.545 5.545 12 C -0.333 4.333 13 H 0.085 0.915 14 C -0.009 4.009 15 N -0.905 5.905 16 Si 0.998 3.002 17 H -0.271 1.271 18 H -0.268 1.268 19 H -0.268 1.268 20 H 0.087 0.913 21 H 0.096 0.904 22 H 0.103 0.897 23 H 0.218 0.782 24 H 0.168 0.832 25 H 0.128 0.872 26 H 0.148 0.852 27 H 0.400 0.600 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 12.092 0.211 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.161 5.161 3 N -0.143 5.143 4 C -0.139 4.139 5 C -0.286 4.286 6 C -0.033 4.033 7 C -0.068 4.068 8 C -0.167 4.167 9 C 0.241 3.759 10 O -0.542 6.542 11 N -0.178 5.178 12 C -0.463 4.463 13 H 0.103 0.897 14 C -0.211 4.211 15 N -0.544 5.544 16 Si 0.821 3.179 17 H -0.196 1.196 18 H -0.193 1.193 19 H -0.193 1.193 20 H 0.105 0.895 21 H 0.115 0.885 22 H 0.121 0.879 23 H 0.235 0.765 24 H 0.185 0.815 25 H 0.145 0.855 26 H 0.166 0.834 27 H 0.235 0.765 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.638 12.804 0.116 13.073 hybrid contribution 0.777 -1.504 0.021 1.693 sum -1.861 11.300 0.137 11.453 Atomic orbital electron populations 1.22166 0.72539 1.05580 1.04718 1.49211 1.07561 1.02688 1.56684 1.77203 1.02911 1.08578 1.25655 1.24207 0.95435 0.95306 0.98909 1.22237 0.96048 0.95602 1.14719 1.20237 0.91683 0.87855 1.03475 1.21187 0.99876 0.87696 0.98011 1.21955 1.01366 0.91310 1.02082 1.17299 0.86014 0.86976 0.85650 1.90622 1.19289 1.85607 1.58632 1.41970 1.10214 1.05769 1.59853 1.19846 0.95823 0.82633 1.48001 0.89717 1.26207 0.94695 1.04640 0.95519 1.69633 1.01955 1.36115 1.46658 0.84798 0.78471 0.76096 0.78569 1.19565 1.19296 1.19285 0.89466 0.88506 0.87858 0.76523 0.81451 0.85469 0.83439 0.76529 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.76 11.35 127.77 1.45 3.21 15 2 N -0.38 -10.38 4.07 -356.60 -1.45 -11.83 15 3 N -0.32 -8.91 12.54 -57.41 -0.72 -9.63 15 4 C 0.04 1.04 11.96 85.04 1.02 2.06 15 5 C -0.26 -6.68 10.20 22.55 0.23 -6.45 15 6 C 0.09 2.78 6.91 40.53 0.28 3.06 15 7 C -0.04 -1.47 9.21 23.73 0.22 -1.25 15 8 C -0.14 -5.31 9.31 22.46 0.21 -5.10 15 9 C 0.45 21.83 7.51 85.08 0.64 22.47 15 10 O -0.65 -36.49 15.69 -4.69 -0.07 -36.56 15 11 N -0.55 -27.93 5.26 -315.09 -1.66 -29.59 15 12 C -0.33 -18.58 9.67 84.14 0.81 -17.77 15 13 H 0.08 5.04 7.15 -2.91 -0.02 5.02 15 14 C -0.01 -0.44 5.50 84.98 0.47 0.03 15 15 N -0.90 -47.04 13.05 21.69 0.28 -46.76 15 16 Si 1.00 41.27 29.55 68.60 2.03 43.29 15 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 18 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 19 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 20 H 0.09 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.10 1.77 7.29 -2.39 -0.02 1.75 15 22 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.22 3.25 8.06 -2.91 -0.02 3.22 15 24 H 0.17 3.68 7.33 -2.91 -0.02 3.66 15 25 H 0.13 4.41 6.87 -2.91 -0.02 4.39 15 26 H 0.15 4.50 6.98 -2.91 -0.02 4.48 15 27 H 0.40 19.22 7.85 -92.71 -0.73 18.49 15 28 H 0.28 13.63 8.31 -92.71 -0.77 12.86 15 Total: -1.00 -68.42 259.22 4.19 -64.23 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.46 Total: 26.60 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 5.33 Total: 0.25 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -3.55 Total: -97.81 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.07 Total: -36.56 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -68.42 4.19 -64.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701217310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.296 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds