Wall clock time and date at job start Mon Mar 30 2020 04:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.25123 * 2 1 4 4 C 1.53724 * 110.28177 * 237.98099 * 2 1 3 5 5 C 1.51307 * 104.58167 * 240.95350 * 4 2 1 6 6 C 1.39058 * 108.43691 * 359.97438 * 5 4 2 7 7 C 1.39056 * 119.31110 * 179.97438 * 6 5 4 8 8 C 1.40354 * 120.12805 * 359.97438 * 7 6 5 9 9 C 1.41406 * 120.13809 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99597 * 335.19599 * 9 8 7 11 11 C 1.39918 * 120.00530 * 155.19969 * 9 8 7 12 12 N 1.30836 * 119.99633 * 342.19317 * 11 9 8 13 13 Si 1.86792 * 120.00466 * 162.19344 * 11 9 8 14 14 H 1.48508 * 109.47249 * 94.65760 * 13 11 9 15 15 H 1.48494 * 109.47476 * 214.65820 * 13 11 9 16 16 H 1.48501 * 109.47129 * 334.66330 * 13 11 9 17 17 C 1.40708 * 119.72585 * 0.02562 * 8 7 6 18 18 C 1.37853 * 119.56124 * 359.97438 * 17 8 7 19 19 F 1.35101 * 119.78223 * 180.02562 * 18 17 8 20 20 N 1.39827 * 111.60943 * 0.05451 * 6 5 4 21 21 H 1.09002 * 109.47179 * 180.69761 * 1 2 3 22 22 H 1.09005 * 109.47012 * 300.69464 * 1 2 3 23 23 H 1.08994 * 109.47691 * 60.69618 * 1 2 3 24 24 H 1.09000 * 110.41116 * 359.72913 * 4 2 1 25 25 H 1.08999 * 110.41070 * 122.17539 * 4 2 1 26 26 H 1.07999 * 119.93835 * 180.02562 * 7 6 5 27 27 H 0.96998 * 120.00098 * 180.02562 * 12 11 9 28 28 H 1.08000 * 120.21794 * 179.97438 * 17 8 7 29 29 H 0.97001 * 125.04854 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9072 1.0226 0.0000 4 6 2.0628 -0.7645 -1.2226 5 6 2.8617 -1.9087 -0.6378 6 6 2.8031 -1.8225 0.7488 7 6 3.4659 -2.7722 1.5185 8 6 4.1847 -3.8054 0.8975 9 6 4.8584 -4.7716 1.6800 10 1 5.1696 -4.5304 2.6856 11 6 5.1218 -6.0401 1.1514 12 7 4.4648 -6.4603 0.1010 13 14 6.4114 -7.1335 1.9455 14 1 5.7552 -8.0531 2.9094 15 1 7.1020 -7.9262 0.8968 16 1 7.4021 -6.2904 2.6617 17 6 4.2323 -3.8758 -0.5070 18 6 3.5709 -2.9280 -1.2583 19 9 3.6132 -2.9916 -2.6072 20 7 2.0386 -0.7282 1.1649 21 1 -0.3634 -1.0276 0.0125 22 1 -0.3633 0.5246 0.8837 23 1 -0.3634 0.5029 -0.8961 24 1 1.2364 -1.1454 -1.8226 25 1 2.7048 -0.1205 -1.8235 26 1 3.4268 -2.7152 2.5963 27 1 4.6471 -7.3398 -0.2653 28 1 4.7834 -4.6672 -0.9932 29 1 1.8697 -0.4857 2.0888 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713730975.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:25 Heat of formation + Delta-G solvation = -49.029805 kcal Electronic energy + Delta-G solvation = -14608.187168 eV Core-core repulsion = 12022.966000 eV Total energy + Delta-G solvation = -2585.221168 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.52192 -40.67321 -37.63197 -35.00668 -32.41459 -31.65649 -29.47608 -28.32665 -25.78666 -22.86869 -22.11033 -21.76888 -19.56040 -17.80290 -17.42971 -16.64963 -16.43024 -16.06285 -15.83544 -15.59168 -15.02757 -14.26708 -13.88587 -13.65159 -13.43498 -13.15634 -12.83181 -12.71864 -12.47487 -12.33007 -12.27412 -11.98436 -11.77847 -11.55031 -11.12303 -10.43055 -9.23474 -8.68086 -8.03234 -6.42764 0.82376 1.10722 1.39896 1.50919 1.57021 2.20316 2.65361 2.71519 3.60573 3.83930 3.90768 4.06297 4.25186 4.53028 4.75178 4.76564 4.88504 4.96750 5.04734 5.09073 5.13499 5.31522 5.37959 5.41675 5.74191 5.82123 5.92628 6.12249 6.41481 6.65857 6.89562 6.93173 7.27485 8.29679 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.044188 B = 0.008149 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.506441 B = 3435.340984 C = 3897.357977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.148 3.852 3 H 0.090 0.910 4 C -0.055 4.055 5 C -0.335 4.335 6 C 0.240 3.760 7 C -0.305 4.305 8 C 0.135 3.865 9 C -0.490 4.490 10 H 0.085 0.915 11 C 0.035 3.965 12 N -0.820 5.820 13 Si 0.987 3.013 14 H -0.260 1.260 15 H -0.267 1.267 16 H -0.255 1.255 17 C -0.261 4.261 18 C 0.138 3.862 19 F -0.166 7.166 20 N -0.743 5.743 21 H 0.039 0.961 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.290 0.710 28 H 0.108 0.892 29 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.719 7.686 0.941 8.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.108 0.892 4 C -0.092 4.092 5 C -0.341 4.341 6 C 0.136 3.864 7 C -0.329 4.329 8 C 0.132 3.868 9 C -0.519 4.519 10 H 0.103 0.897 11 C -0.181 4.181 12 N -0.445 5.445 13 Si 0.807 3.193 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.179 1.179 17 C -0.282 4.282 18 C 0.119 3.881 19 F -0.145 7.145 20 N -0.378 5.378 21 H 0.059 0.941 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -3.855 7.619 0.666 8.565 hybrid contribution 0.488 -0.836 0.249 1.000 sum -3.367 6.782 0.915 7.627 Atomic orbital electron populations 1.22177 0.93744 1.01725 1.03487 1.21388 0.94773 0.95457 0.84070 0.89199 1.20808 0.97729 0.93512 0.97162 1.19485 1.15976 1.04406 0.94212 1.17890 0.89320 0.87361 0.91784 1.20359 1.12166 1.02654 0.97756 1.17291 0.87689 0.90786 0.91066 1.19850 1.33786 0.96914 1.01332 0.89698 1.26884 0.96726 0.99763 0.94701 1.69916 1.34340 1.19426 1.20827 0.85125 0.77938 0.77494 0.78756 1.18413 1.19176 1.17884 1.20980 1.10239 1.02105 0.94901 1.17190 0.99531 0.96405 0.75007 1.91297 1.95407 1.96491 1.31309 1.44787 1.56646 1.28429 1.07909 0.94131 0.90974 0.89670 0.91183 0.90916 0.88112 0.89928 0.87383 0.74694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.36 71.98 0.67 -2.76 15 2 C 0.15 4.17 4.31 45.23 0.19 4.36 15 3 H 0.09 2.10 8.14 -2.39 -0.02 2.08 15 4 C -0.05 -1.91 6.58 30.28 0.20 -1.71 15 5 C -0.33 -15.48 6.23 -19.34 -0.12 -15.60 15 6 C 0.24 10.75 7.01 38.26 0.27 11.01 15 7 C -0.30 -15.31 9.81 22.98 0.23 -15.09 15 8 C 0.14 7.54 5.56 -21.38 -0.12 7.42 15 9 C -0.49 -26.62 9.04 23.46 0.21 -26.40 15 10 H 0.08 4.36 7.91 -2.91 -0.02 4.34 15 11 C 0.04 1.79 5.13 85.25 0.44 2.23 15 12 N -0.82 -43.97 10.97 21.82 0.24 -43.73 15 13 Si 0.99 38.07 29.59 68.60 2.03 40.10 15 14 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 15 H -0.27 -9.89 7.11 99.48 0.71 -9.19 15 16 H -0.26 -9.58 7.11 99.48 0.71 -8.88 15 17 C -0.26 -14.75 8.67 22.78 0.20 -14.55 15 18 C 0.14 7.21 7.28 22.32 0.16 7.37 15 19 F -0.17 -8.25 17.25 44.97 0.78 -7.48 15 20 N -0.74 -25.03 6.18 -317.45 -1.96 -27.00 15 21 H 0.04 1.08 8.14 -2.39 -0.02 1.06 15 22 H 0.07 1.34 8.14 -2.38 -0.02 1.32 15 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 15 24 H 0.07 2.33 7.70 -2.39 -0.02 2.31 15 25 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.10 4.74 8.06 -2.91 -0.02 4.72 15 27 H 0.29 13.99 8.30 -92.71 -0.77 13.22 15 28 H 0.11 6.41 6.18 -2.91 -0.02 6.40 15 29 H 0.41 11.71 8.96 -92.71 -0.83 10.87 15 Total: -1.00 -62.30 252.12 3.76 -58.54 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.34 Total: 23.27 kcal Atomic # 6 Polarization: -46.04 SS G_CDS: 2.33 Total: -43.71 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.72 Total: -70.73 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 0.78 Total: -7.48 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -62.30 3.76 -58.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713730975.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.512 kcal (2) G-P(sol) polarization free energy of solvation -62.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds