Wall clock time and date at job start Mon Mar 30 2020 04:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 110.24628 * 2 1 4 4 C 1.53707 * 110.28154 * 122.02509 * 2 1 3 5 5 C 1.51304 * 104.58072 * 119.04484 * 4 2 1 6 6 C 1.39059 * 108.43860 * 359.97438 * 5 4 2 7 7 C 1.39055 * 119.30796 * 180.02562 * 6 5 4 8 8 C 1.40351 * 120.13336 * 359.97438 * 7 6 5 9 9 C 1.41408 * 120.13655 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00186 * 334.80739 * 9 8 7 11 11 C 1.39932 * 119.99632 * 154.80659 * 9 8 7 12 12 N 1.30829 * 120.00155 * 334.25496 * 11 9 8 13 13 Si 1.86801 * 119.99620 * 154.25759 * 11 9 8 14 14 H 1.48496 * 109.47058 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47191 * 59.99917 * 13 11 9 16 16 H 1.48501 * 109.47401 * 299.99906 * 13 11 9 17 17 C 1.40708 * 119.72633 * 0.27489 * 8 7 6 18 18 C 1.37851 * 119.55939 * 359.49486 * 17 8 7 19 19 F 1.35103 * 119.78862 * 180.26983 * 18 17 8 20 20 N 1.39622 * 111.57591 * 0.02562 * 6 5 4 21 21 H 1.09001 * 109.46893 * 297.97483 * 1 2 3 22 22 H 1.09000 * 109.46844 * 57.97386 * 1 2 3 23 23 H 1.09000 * 109.46565 * 177.97716 * 1 2 3 24 24 H 1.09001 * 110.41922 * 0.26847 * 4 2 1 25 25 H 1.08999 * 110.41492 * 237.81692 * 4 2 1 26 26 H 1.08002 * 119.93189 * 180.02562 * 7 6 5 27 27 H 0.96994 * 119.99906 * 354.28037 * 12 11 9 28 28 H 1.07994 * 120.21680 * 179.73932 * 17 8 7 29 29 H 0.97002 * 124.93534 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9073 1.0227 0.0000 4 6 2.0629 -0.7646 1.2224 5 6 2.8618 -1.9087 0.6375 6 6 2.8022 -1.8231 -0.7492 7 6 3.4648 -2.7729 -1.5189 8 6 4.1853 -3.8050 -0.8980 9 6 4.8586 -4.7712 -1.6807 10 1 4.5209 -4.9841 -2.6842 11 6 5.9626 -5.4515 -1.1549 12 7 6.6812 -4.9010 -0.2103 13 14 6.4104 -7.1458 -1.8018 14 1 7.6103 -7.6479 -1.0855 15 1 6.7010 -7.0597 -3.2556 16 1 5.2754 -8.0770 -1.5783 17 6 4.2295 -3.8779 0.5065 18 6 3.5723 -2.9273 1.2579 19 9 3.6163 -2.9897 2.6068 20 7 2.0395 -0.7295 -1.1638 21 1 -0.3633 0.4821 0.9076 22 1 -0.3633 0.5450 -0.8713 23 1 -0.3632 -1.0271 -0.0363 24 1 1.2365 -1.1456 1.8225 25 1 2.7050 -0.1207 1.8233 26 1 3.4256 -2.7158 -2.5967 27 1 6.5004 -3.9895 0.0677 28 1 4.7780 -4.6712 0.9925 29 1 1.8715 -0.4879 -2.0881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713730978.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:30 Heat of formation + Delta-G solvation = -39.215966 kcal Electronic energy + Delta-G solvation = -14642.902667 eV Core-core repulsion = 12058.107059 eV Total energy + Delta-G solvation = -2584.795608 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.72445 -39.15498 -36.16503 -33.26758 -30.92570 -29.86778 -27.81455 -26.50096 -24.09092 -21.15118 -20.54512 -20.35797 -18.07749 -16.48318 -15.53022 -14.87784 -14.59674 -14.28283 -14.11279 -13.98138 -13.59063 -12.80475 -12.48154 -12.35812 -11.89164 -11.46205 -11.30176 -11.17927 -11.04795 -10.79766 -10.42973 -10.36051 -10.14851 -9.63614 -9.23208 -8.75056 -7.51666 -7.21463 -6.46327 -4.53294 2.64983 2.85686 3.15701 3.25640 3.36689 3.99006 4.10593 4.46985 5.11084 5.25189 5.37665 5.50008 5.62890 5.75028 5.87065 6.00631 6.17617 6.29508 6.53463 6.66163 6.69287 6.91907 6.96307 7.41626 7.50860 7.60482 7.76446 7.81418 8.12854 8.34009 8.56553 8.73264 8.86792 10.01657 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.044836 B = 0.008165 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.345313 B = 3428.533861 C = 3884.929960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 H 0.062 0.938 4 C -0.051 4.051 5 C -0.334 4.334 6 C 0.245 3.755 7 C -0.291 4.291 8 C 0.146 3.854 9 C -0.514 4.514 10 H 0.079 0.921 11 C 0.039 3.961 12 N -0.789 5.789 13 Si 1.066 2.934 14 H -0.273 1.273 15 H -0.275 1.275 16 H -0.273 1.273 17 C -0.285 4.285 18 C 0.172 3.828 19 F -0.165 7.165 20 N -0.753 5.753 21 H 0.061 0.939 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.302 0.698 28 H 0.117 0.883 29 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 4.880 -0.600 7.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 H 0.079 0.921 4 C -0.088 4.088 5 C -0.340 4.340 6 C 0.144 3.856 7 C -0.316 4.316 8 C 0.142 3.858 9 C -0.542 4.542 10 H 0.097 0.903 11 C -0.184 4.184 12 N -0.411 5.411 13 Si 0.890 3.110 14 H -0.198 1.198 15 H -0.201 1.201 16 H -0.199 1.199 17 C -0.306 4.306 18 C 0.152 3.848 19 F -0.144 7.144 20 N -0.387 5.387 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.135 0.865 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.128 3.753 -0.214 6.358 hybrid contribution -1.189 1.488 -0.391 1.944 sum -6.317 5.240 -0.605 8.230 Atomic orbital electron populations 1.22236 0.96044 1.02282 1.01266 1.21139 0.93003 0.95092 0.86482 0.92052 1.20605 0.97811 0.94732 0.95652 1.18947 1.17093 1.04509 0.93411 1.17767 0.89079 0.86750 0.91987 1.20145 1.14368 0.99908 0.97163 1.17000 0.88924 0.89331 0.90544 1.20544 1.12844 1.18435 1.02347 0.90294 1.27073 0.92763 1.05078 0.93490 1.70437 1.33141 1.16668 1.20852 0.83623 0.77365 0.73450 0.76612 1.19805 1.20086 1.19884 1.20913 1.12332 1.02918 0.94409 1.16870 0.97721 0.95406 0.74781 1.91329 1.95246 1.96375 1.31429 1.44670 1.57708 1.29941 1.06375 0.92029 0.93044 0.92146 0.91984 0.92205 0.88825 0.88462 0.86494 0.76282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.36 37.16 0.35 -1.71 15 2 C 0.15 2.34 4.31 -67.56 -0.29 2.05 15 3 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 4 C -0.05 -0.93 6.58 -27.22 -0.18 -1.11 15 5 C -0.33 -7.70 6.23 -103.80 -0.65 -8.35 15 6 C 0.25 5.54 7.01 -83.70 -0.59 4.96 15 7 C -0.29 -7.20 9.81 -38.48 -0.38 -7.58 15 8 C 0.15 3.90 5.29 -106.96 -0.57 3.34 15 9 C -0.51 -13.58 8.98 -37.74 -0.34 -13.92 15 10 H 0.08 2.01 7.96 -52.49 -0.42 1.59 15 11 C 0.04 0.99 4.93 -17.34 -0.09 0.90 15 12 N -0.79 -21.05 12.32 55.55 0.68 -20.37 15 13 Si 1.07 21.36 30.00 -169.99 -5.10 16.26 15 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 15 H -0.28 -5.20 7.11 56.52 0.40 -4.80 15 16 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 17 C -0.28 -7.57 7.93 -38.79 -0.31 -7.88 15 18 C 0.17 4.30 7.28 -39.51 -0.29 4.02 15 19 F -0.16 -3.95 17.25 2.25 0.04 -3.91 15 20 N -0.75 -13.55 6.17 -51.74 -0.32 -13.86 15 21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.06 1.08 7.70 -51.93 -0.40 0.68 15 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.09 2.20 8.06 -52.49 -0.42 1.78 15 27 H 0.30 8.32 6.71 -40.82 -0.27 8.05 15 28 H 0.12 3.22 6.50 -52.49 -0.34 2.88 15 29 H 0.40 6.21 8.96 -40.82 -0.37 5.85 15 LS Contribution 251.37 15.07 3.79 3.79 Total: -1.00 -28.02 251.37 -7.36 -35.38 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.13 Total: 7.99 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -3.32 Total: -25.28 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.37 Total: -34.23 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.04 Total: -3.91 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.10 Total: 16.26 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.02 -7.36 -35.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713730978.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.834 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds