Wall clock time and date at job start Mon Mar 30 2020 04:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 110.24628 * 2 1 4 4 C 1.53707 * 110.28154 * 122.02509 * 2 1 3 5 5 C 1.51304 * 104.58072 * 119.04484 * 4 2 1 6 6 C 1.39059 * 108.43860 * 359.97438 * 5 4 2 7 7 C 1.39055 * 119.30796 * 180.02562 * 6 5 4 8 8 C 1.40351 * 120.13336 * 359.97438 * 7 6 5 9 9 C 1.41408 * 120.13655 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00186 * 334.80739 * 9 8 7 11 11 C 1.39932 * 119.99632 * 154.80659 * 9 8 7 12 12 N 1.30829 * 120.00155 * 334.25496 * 11 9 8 13 13 Si 1.86801 * 119.99620 * 154.25759 * 11 9 8 14 14 H 1.48496 * 109.47058 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47191 * 59.99917 * 13 11 9 16 16 H 1.48501 * 109.47401 * 299.99906 * 13 11 9 17 17 C 1.40708 * 119.72633 * 0.27489 * 8 7 6 18 18 C 1.37851 * 119.55939 * 359.49486 * 17 8 7 19 19 F 1.35103 * 119.78862 * 180.26983 * 18 17 8 20 20 N 1.39622 * 111.57591 * 0.02562 * 6 5 4 21 21 H 1.09001 * 109.46893 * 297.97483 * 1 2 3 22 22 H 1.09000 * 109.46844 * 57.97386 * 1 2 3 23 23 H 1.09000 * 109.46565 * 177.97716 * 1 2 3 24 24 H 1.09001 * 110.41922 * 0.26847 * 4 2 1 25 25 H 1.08999 * 110.41492 * 237.81692 * 4 2 1 26 26 H 1.08002 * 119.93189 * 180.02562 * 7 6 5 27 27 H 0.96994 * 119.99906 * 354.28037 * 12 11 9 28 28 H 1.07994 * 120.21680 * 179.73932 * 17 8 7 29 29 H 0.97002 * 124.93534 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9073 1.0227 0.0000 4 6 2.0629 -0.7646 1.2224 5 6 2.8618 -1.9087 0.6375 6 6 2.8022 -1.8231 -0.7492 7 6 3.4648 -2.7729 -1.5189 8 6 4.1853 -3.8050 -0.8980 9 6 4.8586 -4.7712 -1.6807 10 1 4.5209 -4.9841 -2.6842 11 6 5.9626 -5.4515 -1.1549 12 7 6.6812 -4.9010 -0.2103 13 14 6.4104 -7.1458 -1.8018 14 1 7.6103 -7.6479 -1.0855 15 1 6.7010 -7.0597 -3.2556 16 1 5.2754 -8.0770 -1.5783 17 6 4.2295 -3.8779 0.5065 18 6 3.5723 -2.9273 1.2579 19 9 3.6163 -2.9897 2.6068 20 7 2.0395 -0.7295 -1.1638 21 1 -0.3633 0.4821 0.9076 22 1 -0.3633 0.5450 -0.8713 23 1 -0.3632 -1.0271 -0.0363 24 1 1.2365 -1.1456 1.8225 25 1 2.7050 -0.1207 1.8233 26 1 3.4256 -2.7158 -2.5967 27 1 6.5004 -3.9895 0.0677 28 1 4.7780 -4.6712 0.9925 29 1 1.8715 -0.4879 -2.0881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713730978.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:30 Heat of formation + Delta-G solvation = -55.477889 kcal Electronic energy + Delta-G solvation = -14643.607837 eV Core-core repulsion = 12058.107059 eV Total energy + Delta-G solvation = -2585.500778 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.67938 -40.82353 -37.95774 -35.07747 -32.53889 -31.51753 -29.62204 -28.12840 -25.83530 -22.97953 -22.30244 -21.86014 -19.96534 -18.21478 -17.32279 -16.57541 -16.44160 -16.01278 -15.81426 -15.71302 -15.26670 -14.40157 -14.12943 -13.86504 -13.30669 -13.18387 -12.95657 -12.69008 -12.54421 -12.35203 -12.09240 -11.94643 -11.84497 -11.48120 -11.02961 -10.58139 -9.49010 -9.18177 -8.17783 -6.55748 0.71509 0.93849 1.52139 1.64537 1.82070 2.32988 2.59356 2.61701 3.41041 3.69628 3.81664 3.95789 4.18652 4.46396 4.58790 4.66676 4.79721 4.85227 4.90817 5.00933 5.09408 5.21503 5.36848 5.53153 5.62207 5.64126 5.78958 5.93214 6.16437 6.44663 6.72208 6.87791 7.16738 7.99469 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.044836 B = 0.008165 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.345313 B = 3428.533861 C = 3884.929960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.147 3.853 3 H 0.090 0.910 4 C -0.055 4.055 5 C -0.338 4.338 6 C 0.250 3.750 7 C -0.309 4.309 8 C 0.124 3.876 9 C -0.546 4.546 10 H 0.081 0.919 11 C 0.004 3.996 12 N -0.811 5.811 13 Si 1.119 2.881 14 H -0.272 1.272 15 H -0.253 1.253 16 H -0.263 1.263 17 C -0.311 4.311 18 C 0.159 3.841 19 F -0.162 7.162 20 N -0.739 5.739 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 6.230 -1.130 9.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.108 0.892 4 C -0.092 4.092 5 C -0.344 4.344 6 C 0.146 3.854 7 C -0.334 4.334 8 C 0.120 3.880 9 C -0.574 4.574 10 H 0.099 0.901 11 C -0.213 4.213 12 N -0.434 5.434 13 Si 0.935 3.065 14 H -0.197 1.197 15 H -0.177 1.177 16 H -0.188 1.188 17 C -0.332 4.332 18 C 0.139 3.861 19 F -0.141 7.141 20 N -0.374 5.374 21 H 0.104 0.896 22 H 0.091 0.909 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.719 5.163 -0.758 8.508 hybrid contribution -0.832 1.248 -0.176 1.511 sum -7.552 6.412 -0.934 9.951 Atomic orbital electron populations 1.22172 0.93371 1.01898 1.03609 1.21428 0.95024 0.95444 0.83904 0.89240 1.20817 0.97808 0.93357 0.97205 1.19489 1.16015 1.04736 0.94171 1.17869 0.88480 0.87238 0.91799 1.20275 1.15041 1.00370 0.97715 1.17303 0.89664 0.90230 0.90797 1.20777 1.13915 1.19925 1.02794 0.90120 1.28560 0.92026 1.08070 0.92628 1.70555 1.34303 1.15922 1.22592 0.83000 0.77337 0.68941 0.77216 1.19665 1.17686 1.18804 1.20797 1.13953 1.03679 0.94814 1.17058 0.98088 0.95936 0.74977 1.91321 1.95261 1.96409 1.31096 1.44792 1.56176 1.28280 1.08118 0.89578 0.90923 0.93860 0.90682 0.90997 0.88224 0.90399 0.88661 0.74615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.36 71.99 0.67 -2.53 15 2 C 0.15 3.99 4.31 45.23 0.20 4.19 15 3 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 4 C -0.05 -1.84 6.58 30.28 0.20 -1.64 15 5 C -0.34 -15.26 6.23 -19.33 -0.12 -15.38 15 6 C 0.25 11.02 7.01 38.29 0.27 11.29 15 7 C -0.31 -15.43 9.81 22.98 0.23 -15.21 15 8 C 0.12 6.85 5.29 -21.38 -0.11 6.74 15 9 C -0.55 -29.84 8.98 23.46 0.21 -29.63 15 10 H 0.08 4.22 7.96 -2.91 -0.02 4.20 15 11 C 0.00 0.22 4.93 85.25 0.42 0.64 15 12 N -0.81 -45.15 12.32 21.82 0.27 -44.88 15 13 Si 1.12 43.32 30.00 68.60 2.06 45.37 15 14 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 15 H -0.25 -8.81 7.11 99.48 0.71 -8.11 15 16 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 17 C -0.31 -17.29 7.93 22.78 0.18 -17.11 15 18 C 0.16 8.11 7.28 22.32 0.16 8.27 15 19 F -0.16 -7.85 17.25 44.97 0.78 -7.07 15 20 N -0.74 -24.33 6.17 -317.62 -1.96 -26.29 15 21 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.07 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 15 24 H 0.07 2.36 7.70 -2.39 -0.02 2.34 15 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 26 H 0.10 4.71 8.06 -2.91 -0.02 4.69 15 27 H 0.28 16.60 6.71 -92.71 -0.62 15.97 15 28 H 0.10 5.59 6.50 -2.91 -0.02 5.57 15 29 H 0.42 11.45 8.96 -92.71 -0.83 10.62 15 Total: -1.00 -62.57 251.37 3.93 -58.64 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.49 Total: 24.62 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 2.30 Total: -50.39 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.69 Total: -71.17 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.78 Total: -7.07 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.06 Total: 45.37 kcal Total: -62.57 3.93 -58.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713730978.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.157 kcal (2) G-P(sol) polarization free energy of solvation -62.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds