Wall clock time and date at job start Mon Mar 30 2020 04:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.27768 * 2 1 4 4 C 1.53763 * 110.32016 * 122.11074 * 2 1 3 5 5 C 1.51188 * 104.49031 * 119.00462 * 4 2 1 6 6 C 1.38040 * 108.67467 * 0.02562 * 5 4 2 7 7 C 1.40063 * 119.18993 * 179.97438 * 6 5 4 8 8 C 1.38474 * 120.79311 * 0.02588 * 7 6 5 9 9 F 1.35097 * 119.76781 * 179.97438 * 8 7 6 10 10 C 1.37869 * 120.45705 * 359.66991 * 8 7 6 11 11 C 1.40602 * 130.96639 * 180.02562 * 5 4 2 12 12 C 1.41409 * 120.15867 * 0.02562 * 11 5 4 13 13 H 1.08003 * 120.00032 * 25.85633 * 12 11 5 14 14 C 1.39926 * 120.00088 * 205.58172 * 12 11 5 15 15 N 1.30836 * 119.99842 * 16.81957 * 14 12 11 16 16 Si 1.86799 * 119.99845 * 196.81910 * 14 12 11 17 17 H 1.48505 * 109.46797 * 90.00000 * 16 14 12 18 18 H 1.48496 * 109.46951 * 209.99694 * 16 14 12 19 19 H 1.48497 * 109.47464 * 330.00017 * 16 14 12 20 20 N 1.39644 * 111.67960 * 359.97438 * 6 5 4 21 21 H 1.08997 * 109.47636 * 297.88829 * 1 2 3 22 22 H 1.09006 * 109.47123 * 57.89115 * 1 2 3 23 23 H 1.09005 * 109.46937 * 177.88755 * 1 2 3 24 24 H 1.09000 * 110.43052 * 0.25005 * 4 2 1 25 25 H 1.08996 * 110.43142 * 237.76032 * 4 2 1 26 26 H 1.07997 * 119.60569 * 180.02562 * 7 6 5 27 27 H 1.08005 * 120.24435 * 180.32889 * 10 8 7 28 28 H 0.96997 * 119.99875 * 180.02562 * 15 14 12 29 29 H 0.97003 * 124.96470 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0640 -0.7665 1.2214 5 6 2.8610 -1.9084 0.6326 6 6 2.8035 -1.8239 -0.7440 7 6 3.4731 -2.7819 -1.5158 8 6 4.1860 -3.8051 -0.9137 9 9 4.8237 -4.7183 -1.6781 10 6 4.2545 -3.8945 0.4604 11 6 3.5827 -2.9443 1.2514 12 6 3.6382 -3.0271 2.6620 13 1 2.8444 -2.6036 3.2595 14 6 4.7187 -3.6629 3.2835 15 7 5.8200 -3.8862 2.6133 16 14 4.5889 -4.1927 5.0701 17 1 4.0556 -5.5770 5.1383 18 1 5.9337 -4.1487 5.6983 19 1 3.6741 -3.2736 5.7938 20 7 2.0413 -0.7312 -1.1624 21 1 -0.3634 0.4807 0.9083 22 1 -0.3634 0.5463 -0.8705 23 1 -0.3633 -1.0270 -0.0379 24 1 1.2383 -1.1485 1.8217 25 1 2.7071 -0.1238 1.8225 26 1 3.4330 -2.7219 -2.5933 27 1 4.8159 -4.6909 0.9263 28 1 6.5689 -4.3272 3.0440 29 1 1.8751 -0.4909 -2.0874 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713733518.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:48 Heat of formation + Delta-G solvation = -31.803723 kcal Electronic energy + Delta-G solvation = -14690.362233 eV Core-core repulsion = 12105.888043 eV Total energy + Delta-G solvation = -2584.474189 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.57014 -39.06235 -35.58118 -33.38061 -30.93420 -29.61909 -28.08160 -25.90355 -24.58305 -21.10642 -20.34783 -19.89470 -17.56111 -16.24037 -15.55230 -14.87966 -14.55055 -14.43161 -14.16579 -13.74043 -12.99512 -12.78419 -12.59427 -11.93036 -11.78236 -11.56057 -11.19916 -11.07948 -10.94051 -10.65455 -10.53041 -10.44172 -10.01335 -9.51558 -9.31540 -8.64555 -7.32214 -6.80591 -6.23785 -4.44468 2.71183 2.98974 3.07197 3.09893 3.23232 3.90640 4.19143 4.56002 5.30727 5.40669 5.58361 5.69676 5.82575 6.00494 6.04830 6.24036 6.36285 6.44553 6.69963 6.80335 6.93024 6.97005 7.11389 7.17687 7.74527 7.79105 7.83929 8.05681 8.18959 8.56271 8.77910 8.87387 8.91406 10.14954 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.011295 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.418624 B = 2478.483615 C = 3511.914587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.147 3.853 3 H 0.059 0.941 4 C -0.052 4.052 5 C -0.275 4.275 6 C 0.231 3.769 7 C -0.326 4.326 8 C 0.136 3.864 9 F -0.167 7.167 10 C -0.231 4.231 11 C 0.174 3.826 12 C -0.453 4.453 13 H 0.082 0.918 14 C 0.076 3.924 15 N -0.785 5.785 16 Si 0.909 3.091 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.261 1.261 20 N -0.754 5.754 21 H 0.061 0.939 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.129 0.871 28 H 0.282 0.718 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 4.233 -0.868 6.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.077 0.923 4 C -0.089 4.089 5 C -0.281 4.281 6 C 0.130 3.870 7 C -0.350 4.350 8 C 0.116 3.884 9 F -0.146 7.146 10 C -0.252 4.252 11 C 0.170 3.830 12 C -0.482 4.482 13 H 0.100 0.900 14 C -0.143 4.143 15 N -0.409 5.409 16 Si 0.734 3.266 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.185 1.185 20 N -0.389 5.389 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.147 0.853 28 H 0.093 0.907 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.204 4.211 -0.796 6.742 hybrid contribution 0.128 -0.282 0.121 0.333 sum -5.076 3.929 -0.675 6.454 Atomic orbital electron populations 1.22230 0.96295 1.02155 1.01068 1.21216 0.92767 0.95083 0.86854 0.92264 1.20619 0.97997 0.95150 0.95137 1.19657 1.14814 1.02067 0.91562 1.17631 0.89817 0.86599 0.92952 1.19326 1.15920 1.02562 0.97226 1.17184 0.94699 0.87616 0.88878 1.91322 1.80626 1.66082 1.76573 1.21063 1.10271 1.04227 0.89631 1.16594 0.86716 0.86774 0.92915 1.19555 1.05480 1.31646 0.91526 0.90031 1.25970 0.94351 0.93292 1.00692 1.69847 1.02436 1.30105 1.38537 0.86290 0.78526 0.80070 0.81740 1.19189 1.20278 1.18520 1.44652 1.57916 1.30033 1.06252 0.92033 0.93368 0.92197 0.91922 0.91799 0.88830 0.85309 0.90682 0.76785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.37 37.16 0.35 -1.81 15 2 C 0.15 2.43 4.32 -67.51 -0.29 2.14 15 3 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 4 C -0.05 -1.02 6.24 -27.25 -0.17 -1.19 15 5 C -0.27 -6.64 6.13 -103.56 -0.64 -7.28 15 6 C 0.23 5.27 7.02 -83.69 -0.59 4.68 15 7 C -0.33 -7.79 10.05 -38.81 -0.39 -8.18 15 8 C 0.14 3.48 7.26 -39.63 -0.29 3.19 15 9 F -0.17 -4.10 17.26 2.25 0.04 -4.06 15 10 C -0.23 -6.23 8.67 -38.78 -0.34 -6.57 15 11 C 0.17 4.61 5.57 -106.86 -0.59 4.02 15 12 C -0.45 -11.71 8.84 -37.74 -0.33 -12.05 15 13 H 0.08 2.01 7.83 -52.48 -0.41 1.60 15 14 C 0.08 1.88 5.15 -17.34 -0.09 1.79 15 15 N -0.78 -20.25 10.95 55.55 0.61 -19.64 15 16 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 15 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 19 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 20 N -0.75 -13.86 6.18 -51.68 -0.32 -14.18 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.06 1.18 7.71 -51.93 -0.40 0.78 15 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.09 2.05 8.06 -52.49 -0.42 1.62 15 27 H 0.13 3.59 6.18 -52.48 -0.32 3.27 15 28 H 0.28 6.61 8.30 -40.82 -0.34 6.27 15 29 H 0.40 6.21 8.96 -40.82 -0.37 5.85 15 LS Contribution 251.66 15.07 3.79 3.79 Total: -1.00 -27.79 251.66 -7.45 -35.24 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -3.17 Total: 6.85 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -3.37 Total: -21.26 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.29 Total: -33.82 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.04 Total: -4.06 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.79 -7.45 -35.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713733518.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.432 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds