Wall clock time and date at job start Mon Mar 30 2020 04:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.68359 * 2 1 4 4 C 1.54596 * 110.77119 * 236.72777 * 2 1 3 5 5 C 1.52143 * 102.48117 * 267.31782 * 4 2 1 6 6 C 1.36195 * 131.36741 * 163.69529 * 5 4 2 7 7 C 1.40895 * 119.92441 * 180.30671 * 6 5 4 8 8 C 1.41120 * 120.29710 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99892 * 204.44018 * 8 7 6 10 10 C 1.39853 * 119.99939 * 24.43914 * 8 7 6 11 11 N 1.30904 * 120.00075 * 17.91009 * 10 8 7 12 12 Si 1.86807 * 119.99844 * 197.90031 * 10 8 7 13 13 H 1.48498 * 109.46655 * 60.00614 * 12 10 8 14 14 H 1.48504 * 109.46885 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47237 * 300.00700 * 12 10 8 16 16 C 1.40905 * 119.40789 * 0.09440 * 7 6 5 17 17 C 1.36253 * 120.00664 * 359.77258 * 16 7 6 18 18 F 1.35092 * 119.76297 * 180.02562 * 17 16 7 19 19 C 1.39595 * 107.86391 * 343.78905 * 5 4 2 20 20 N 1.39396 * 110.91716 * 359.51282 * 19 5 4 21 21 H 1.08996 * 109.47335 * 300.70677 * 1 2 3 22 22 H 1.09000 * 109.46599 * 60.70268 * 1 2 3 23 23 H 1.08998 * 109.47378 * 180.69545 * 1 2 3 24 24 H 1.09008 * 110.76254 * 25.68699 * 4 2 1 25 25 H 1.09001 * 110.76623 * 149.06990 * 4 2 1 26 26 H 1.08003 * 120.04203 * 0.33042 * 6 5 4 27 27 H 0.97001 * 119.99927 * 179.97438 * 11 10 8 28 28 H 1.07998 * 119.99538 * 179.80682 * 16 7 6 29 29 H 1.00894 * 110.99976 * 256.30729 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0198 0.0000 4 6 2.0783 -0.7930 -1.2085 5 6 2.2599 -2.1888 -0.6309 6 6 2.4297 -3.3977 -1.2347 7 6 2.5710 -4.5606 -0.4519 8 6 2.7479 -5.8172 -1.0693 9 1 2.4686 -6.7199 -0.5463 10 6 3.2850 -5.8936 -2.3583 11 7 3.9401 -4.8753 -2.8558 12 14 3.0676 -7.4488 -3.3701 13 1 1.6197 -7.7118 -3.5685 14 1 3.7254 -7.2765 -4.6903 15 1 3.6854 -8.5946 -2.6554 16 6 2.5326 -4.4580 0.9529 17 6 2.3648 -3.2413 1.5428 18 9 2.3292 -3.1485 2.8901 19 6 2.2277 -2.0838 0.7607 20 7 2.0543 -0.7583 1.1560 21 1 -0.3634 0.5247 0.8835 22 1 -0.3632 0.5029 -0.8962 23 1 -0.3634 -1.0276 0.0125 24 1 1.3565 -0.8006 -2.0254 25 1 3.0328 -0.3832 -1.5388 26 1 2.4565 -3.4649 -2.3123 27 1 4.3129 -4.9284 -3.7498 28 1 2.6368 -5.3437 1.5620 29 1 2.9222 -0.3625 1.4846 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713740846.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:53 Heat of formation + Delta-G solvation = -29.897943 kcal Electronic energy + Delta-G solvation = -14713.724482 eV Core-core repulsion = 12129.332934 eV Total energy + Delta-G solvation = -2584.391548 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.62902 -39.26793 -35.98830 -33.27173 -30.53710 -29.84565 -28.19611 -26.02827 -24.65488 -21.10540 -20.22208 -19.80268 -17.38780 -16.53417 -15.34532 -15.00907 -14.70098 -14.61683 -14.13813 -13.65111 -13.16833 -12.98942 -12.16392 -11.88113 -11.81746 -11.63271 -11.28535 -11.19288 -10.88822 -10.75272 -10.64382 -10.32318 -10.10233 -9.72095 -9.20082 -8.64516 -7.42976 -7.01394 -6.83739 -4.46212 2.55489 2.79066 2.99793 3.01619 3.08434 3.82519 4.38688 4.64011 5.22054 5.36470 5.51478 5.57105 5.76014 5.87125 6.08243 6.21728 6.32838 6.37686 6.58135 6.69027 6.81627 6.92728 7.05999 7.12764 7.48220 7.65818 7.80562 7.89339 8.07533 8.24410 8.46308 8.70796 8.80044 10.02167 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035167 B = 0.009047 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.004843 B = 3094.371856 C = 3649.523528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.082 3.918 3 H 0.075 0.925 4 C -0.103 4.103 5 C -0.092 4.092 6 C -0.145 4.145 7 C 0.127 3.873 8 C -0.451 4.451 9 H 0.083 0.917 10 C 0.075 3.925 11 N -0.786 5.786 12 Si 0.913 3.087 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.264 1.264 16 C -0.258 4.258 17 C 0.135 3.865 18 F -0.165 7.165 19 C -0.087 4.087 20 N -0.616 5.616 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.122 0.878 27 H 0.284 0.716 28 H 0.109 0.891 29 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 4.659 -0.650 5.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.028 4.028 3 H 0.093 0.907 4 C -0.141 4.141 5 C -0.095 4.095 6 C -0.164 4.164 7 C 0.124 3.876 8 C -0.480 4.480 9 H 0.101 0.899 10 C -0.144 4.144 11 N -0.411 5.411 12 Si 0.737 3.263 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.188 1.188 16 C -0.279 4.279 17 C 0.114 3.886 18 F -0.144 7.144 19 C -0.185 4.185 20 N -0.244 5.244 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.140 0.860 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.669 4.690 -0.457 5.416 hybrid contribution 0.822 -0.625 -0.839 1.330 sum -1.847 4.065 -1.296 4.650 Atomic orbital electron populations 1.21653 0.94318 1.02389 1.00560 1.22290 0.96037 0.95902 0.88531 0.90715 1.21777 1.00602 0.93552 0.98157 1.20289 1.01846 0.94273 0.93111 1.20417 1.05569 0.90263 1.00186 1.17291 0.87546 0.93279 0.89520 1.19490 1.35924 0.93650 0.98928 0.89926 1.25959 0.92373 0.98206 0.97830 1.69849 1.23159 1.31382 1.16684 0.86285 0.79904 0.81524 0.78621 1.18623 1.20212 1.18816 1.20489 1.17266 0.94424 0.95683 1.16766 1.04339 0.92802 0.74668 1.91327 1.94538 1.97254 1.31253 1.18623 1.18785 0.88685 0.92403 1.58200 1.31643 1.00649 1.33876 0.92626 0.92852 0.92187 0.90874 0.91318 0.86029 0.90526 0.87311 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.49 37.16 0.35 -1.68 15 2 C 0.08 1.37 4.10 -66.35 -0.27 1.10 15 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 4 C -0.10 -1.90 6.62 -26.33 -0.17 -2.07 15 5 C -0.09 -2.14 6.18 -104.14 -0.64 -2.78 15 6 C -0.14 -3.67 8.64 -39.31 -0.34 -4.01 15 7 C 0.13 3.33 5.58 -106.79 -0.60 2.73 15 8 C -0.45 -11.58 9.04 -37.89 -0.34 -11.92 15 9 H 0.08 2.02 7.91 -52.49 -0.41 1.61 15 10 C 0.08 1.81 5.14 -17.34 -0.09 1.73 15 11 N -0.79 -19.50 10.96 55.54 0.61 -18.89 15 12 Si 0.91 17.89 29.60 -169.99 -5.03 12.86 15 13 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 14 H -0.28 -5.28 7.11 56.52 0.40 -4.88 15 15 H -0.26 -5.12 7.11 56.52 0.40 -4.71 15 16 C -0.26 -6.50 9.69 -39.29 -0.38 -6.88 15 17 C 0.13 3.32 7.27 -39.50 -0.29 3.03 15 18 F -0.16 -3.90 17.26 2.25 0.04 -3.86 15 19 C -0.09 -2.03 6.71 -83.11 -0.56 -2.59 15 20 N -0.62 -12.17 6.84 -49.99 -0.34 -12.51 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.07 1.26 7.92 -51.92 -0.41 0.85 15 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 26 H 0.12 3.15 6.16 -52.48 -0.32 2.83 15 27 H 0.28 6.38 8.30 -40.82 -0.34 6.05 15 28 H 0.11 2.59 8.06 -52.49 -0.42 2.17 15 29 H 0.33 5.94 8.85 -39.29 -0.35 5.60 15 LS Contribution 252.30 15.07 3.80 3.80 Total: -1.00 -27.03 252.30 -7.42 -34.45 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.17 Total: 7.50 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -3.33 Total: -23.35 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.27 Total: -31.40 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.03 -7.42 -34.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713740846.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.557 kcal (2) G-P(sol) polarization free energy of solvation -27.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds