Wall clock time and date at job start Mon Mar 30 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.70862 * 2 1 4 4 C 1.54618 * 110.96000 * 236.54683 * 2 1 3 5 5 C 1.51644 * 102.69028 * 216.26356 * 4 2 1 6 6 C 1.38013 * 131.45667 * 196.01631 * 5 4 2 7 7 C 1.39129 * 120.62127 * 179.39278 * 6 5 4 8 8 F 1.35100 * 119.91345 * 180.24460 * 7 6 5 9 9 C 1.37637 * 120.17258 * 0.51718 * 7 6 5 10 10 C 1.40536 * 119.97490 * 359.54047 * 9 7 6 11 11 C 1.41032 * 120.16159 * 180.38914 * 10 9 7 12 12 H 1.08006 * 119.99935 * 154.35534 * 11 10 9 13 13 C 1.39921 * 119.99851 * 334.35547 * 11 10 9 14 14 N 1.30871 * 119.99982 * 343.17819 * 13 11 10 15 15 Si 1.86804 * 119.99693 * 163.18186 * 13 11 10 16 16 H 1.48491 * 109.47376 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47088 * 120.00151 * 15 13 11 18 18 H 1.48506 * 109.46764 * 239.99468 * 15 13 11 19 19 C 1.38741 * 107.87802 * 15.89537 * 5 4 2 20 20 N 1.39133 * 111.18413 * 0.80311 * 19 5 4 21 21 H 1.09001 * 109.46577 * 298.12274 * 1 2 3 22 22 H 1.09000 * 109.46849 * 58.11539 * 1 2 3 23 23 H 1.08990 * 109.47203 * 178.12222 * 1 2 3 24 24 H 1.09002 * 110.76434 * 334.56234 * 4 2 1 25 25 H 1.09005 * 110.76978 * 97.96717 * 4 2 1 26 26 H 1.07993 * 119.69104 * 359.67485 * 6 5 4 27 27 H 1.07998 * 120.01120 * 179.81634 * 9 7 6 28 28 H 0.97009 * 120.00081 * 180.02562 * 14 13 11 29 29 H 1.00904 * 111.00221 * 103.48810 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9155 1.0196 0.0000 4 6 2.0831 -0.7959 -1.2047 5 6 3.3162 -1.4623 -0.6258 6 6 4.3993 -2.0648 -1.2330 7 6 5.4305 -2.6033 -0.4699 8 9 6.4865 -3.1854 -1.0793 9 6 5.3750 -2.5495 0.9043 10 6 4.2791 -1.9408 1.5395 11 6 4.2222 -1.8762 2.9472 12 1 3.6524 -1.0956 3.4294 13 6 4.9039 -2.8235 3.7191 14 7 5.3130 -3.9404 3.1733 15 14 5.2300 -2.4937 5.5286 16 1 4.6705 -1.1691 5.8991 17 1 4.5853 -3.5509 6.3485 18 1 6.6942 -2.4991 5.7767 19 6 3.2297 -1.3905 0.7570 20 7 2.0552 -0.7598 1.1552 21 1 -0.3632 0.4844 0.9064 22 1 -0.3633 0.5428 -0.8726 23 1 -0.3633 -1.0270 -0.0337 24 1 1.3619 -1.5416 -1.5391 25 1 2.3533 -0.1249 -2.0201 26 1 4.4491 -2.1147 -2.3106 27 1 6.1755 -2.9710 1.4941 28 1 5.7853 -4.5973 3.7085 29 1 1.3777 -1.4313 1.4843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713742506.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:34 Heat of formation + Delta-G solvation = -29.388108 kcal Electronic energy + Delta-G solvation = -14684.402980 eV Core-core repulsion = 12100.033540 eV Total energy + Delta-G solvation = -2584.369440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.61768 -39.28767 -35.63752 -33.50060 -30.78002 -29.88867 -27.90783 -25.70397 -24.80555 -20.82509 -20.25571 -20.13959 -17.20828 -15.91768 -15.75184 -15.26667 -14.75094 -14.34696 -14.15997 -13.72256 -12.98353 -12.68761 -12.32996 -12.26755 -11.99652 -11.59278 -11.37259 -11.12402 -10.97084 -10.71272 -10.63126 -10.27303 -10.15090 -9.60272 -9.21409 -8.42216 -7.53406 -6.95031 -6.60630 -4.41177 2.61051 2.69549 3.06050 3.10918 3.13632 3.89678 4.44620 4.74841 5.21833 5.28251 5.44421 5.53720 5.64684 5.91334 5.94763 6.11539 6.16110 6.30945 6.36589 6.53558 6.84383 7.00978 7.14869 7.20607 7.46857 7.64719 7.72825 8.07220 8.16557 8.27959 8.58042 8.76855 8.87605 10.09689 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.011536 C = 0.007941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.873072 B = 2426.646904 C = 3525.205842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 H 0.084 0.916 4 C -0.101 4.101 5 C -0.100 4.100 6 C -0.247 4.247 7 C 0.095 3.905 8 F -0.166 7.166 9 C -0.189 4.189 10 C 0.141 3.859 11 C -0.440 4.440 12 H 0.090 0.910 13 C 0.071 3.929 14 N -0.789 5.789 15 Si 0.912 3.088 16 H -0.258 1.258 17 H -0.274 1.274 18 H -0.272 1.272 19 C -0.029 4.029 20 N -0.612 5.612 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.133 0.867 28 H 0.282 0.718 29 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 3.493 -2.291 6.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 H 0.102 0.898 4 C -0.140 4.140 5 C -0.103 4.103 6 C -0.267 4.267 7 C 0.076 3.924 8 F -0.146 7.146 9 C -0.210 4.210 10 C 0.136 3.864 11 C -0.469 4.469 12 H 0.108 0.892 13 C -0.147 4.147 14 N -0.414 5.414 15 Si 0.736 3.264 16 H -0.182 1.182 17 H -0.200 1.200 18 H -0.197 1.197 19 C -0.127 4.127 20 N -0.240 5.240 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.093 0.907 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.644 3.804 -1.876 6.289 hybrid contribution 0.126 -0.819 0.025 0.829 sum -4.518 2.984 -1.851 5.723 Atomic orbital electron populations 1.21937 0.94844 1.01909 1.02031 1.22468 0.93705 0.98293 0.88623 0.89786 1.21690 0.95428 0.98482 0.98367 1.20203 0.95189 1.00196 0.94698 1.19403 0.97134 1.12669 0.97527 1.17476 0.84913 0.98696 0.91327 1.91327 1.56133 1.82928 1.84162 1.21056 1.01023 1.08317 0.90634 1.16806 0.87412 0.89161 0.92974 1.19588 1.25851 1.10662 0.90784 0.89244 1.26035 0.93244 0.93831 1.01592 1.69847 1.27683 1.05248 1.38629 0.86195 0.78960 0.79841 0.81402 1.18158 1.19954 1.19680 1.19285 0.94136 1.07876 0.91387 1.58174 1.04815 1.28415 1.32587 0.91898 0.92115 0.92670 0.91392 0.91337 0.88527 0.84949 0.90662 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.21 37.16 0.34 -1.56 15 2 C 0.08 1.31 4.20 -66.31 -0.28 1.03 15 3 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 4 C -0.10 -1.79 6.59 -26.57 -0.18 -1.97 15 5 C -0.10 -2.25 6.23 -104.05 -0.65 -2.90 15 6 C -0.25 -5.79 10.01 -39.33 -0.39 -6.19 15 7 C 0.10 2.41 7.29 -39.47 -0.29 2.12 15 8 F -0.17 -4.03 17.26 2.25 0.04 -3.99 15 9 C -0.19 -5.05 8.63 -38.94 -0.34 -5.39 15 10 C 0.14 3.73 5.59 -106.53 -0.60 3.13 15 11 C -0.44 -11.46 8.98 -37.89 -0.34 -11.80 15 12 H 0.09 2.30 7.90 -52.48 -0.41 1.88 15 13 C 0.07 1.76 5.14 -17.33 -0.09 1.67 15 14 N -0.79 -20.17 10.96 55.55 0.61 -19.56 15 15 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 15 16 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 18 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 19 C -0.03 -0.70 6.53 -82.92 -0.54 -1.24 15 20 N -0.61 -12.58 6.98 -49.79 -0.35 -12.93 15 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.05 0.69 8.11 -51.93 -0.42 0.27 15 24 H 0.07 1.12 7.90 -51.93 -0.41 0.71 15 25 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 26 H 0.10 2.06 8.06 -52.49 -0.42 1.64 15 27 H 0.13 3.64 6.18 -52.49 -0.32 3.32 15 28 H 0.28 6.54 8.30 -40.82 -0.34 6.21 15 29 H 0.33 6.49 8.37 -39.29 -0.33 6.16 15 LS Contribution 251.89 15.07 3.80 3.80 Total: -1.00 -27.40 251.89 -7.42 -34.82 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.15 Total: 7.55 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -3.34 Total: -23.09 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.26 Total: -32.49 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.40 -7.42 -34.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713742506.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.434 kcal (2) G-P(sol) polarization free energy of solvation -27.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds