Wall clock time and date at job start Mon Mar 30 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.70862 * 2 1 4 4 C 1.54618 * 110.96000 * 236.54683 * 2 1 3 5 5 C 1.51644 * 102.69028 * 216.26356 * 4 2 1 6 6 C 1.38013 * 131.45667 * 196.01631 * 5 4 2 7 7 C 1.39129 * 120.62127 * 179.39278 * 6 5 4 8 8 F 1.35100 * 119.91345 * 180.24460 * 7 6 5 9 9 C 1.37637 * 120.17258 * 0.51718 * 7 6 5 10 10 C 1.40536 * 119.97490 * 359.54047 * 9 7 6 11 11 C 1.41032 * 120.16159 * 180.38914 * 10 9 7 12 12 H 1.08006 * 119.99935 * 154.35534 * 11 10 9 13 13 C 1.39921 * 119.99851 * 334.35547 * 11 10 9 14 14 N 1.30871 * 119.99982 * 343.17819 * 13 11 10 15 15 Si 1.86804 * 119.99693 * 163.18186 * 13 11 10 16 16 H 1.48491 * 109.47376 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47088 * 120.00151 * 15 13 11 18 18 H 1.48506 * 109.46764 * 239.99468 * 15 13 11 19 19 C 1.38741 * 107.87802 * 15.89537 * 5 4 2 20 20 N 1.39133 * 111.18413 * 0.80311 * 19 5 4 21 21 H 1.09001 * 109.46577 * 298.12274 * 1 2 3 22 22 H 1.09000 * 109.46849 * 58.11539 * 1 2 3 23 23 H 1.08990 * 109.47203 * 178.12222 * 1 2 3 24 24 H 1.09002 * 110.76434 * 334.56234 * 4 2 1 25 25 H 1.09005 * 110.76978 * 97.96717 * 4 2 1 26 26 H 1.07993 * 119.69104 * 359.67485 * 6 5 4 27 27 H 1.07998 * 120.01120 * 179.81634 * 9 7 6 28 28 H 0.97009 * 120.00081 * 180.02562 * 14 13 11 29 29 H 1.00904 * 111.00221 * 103.48810 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9155 1.0196 0.0000 4 6 2.0831 -0.7959 -1.2047 5 6 3.3162 -1.4623 -0.6258 6 6 4.3993 -2.0648 -1.2330 7 6 5.4305 -2.6033 -0.4699 8 9 6.4865 -3.1854 -1.0793 9 6 5.3750 -2.5495 0.9043 10 6 4.2791 -1.9408 1.5395 11 6 4.2222 -1.8762 2.9472 12 1 3.6524 -1.0956 3.4294 13 6 4.9039 -2.8235 3.7191 14 7 5.3130 -3.9404 3.1733 15 14 5.2300 -2.4937 5.5286 16 1 4.6705 -1.1691 5.8991 17 1 4.5853 -3.5509 6.3485 18 1 6.6942 -2.4991 5.7767 19 6 3.2297 -1.3905 0.7570 20 7 2.0552 -0.7598 1.1552 21 1 -0.3632 0.4844 0.9064 22 1 -0.3633 0.5428 -0.8726 23 1 -0.3633 -1.0270 -0.0337 24 1 1.3619 -1.5416 -1.5391 25 1 2.3533 -0.1249 -2.0201 26 1 4.4491 -2.1147 -2.3106 27 1 6.1755 -2.9710 1.4941 28 1 5.7853 -4.5973 3.7085 29 1 1.3777 -1.4313 1.4843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713742506.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:34 Heat of formation + Delta-G solvation = -45.142305 kcal Electronic energy + Delta-G solvation = -14685.086133 eV Core-core repulsion = 12100.033540 eV Total energy + Delta-G solvation = -2585.052593 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.57068 -40.95052 -37.37706 -35.33638 -32.49771 -31.39185 -29.65110 -27.40396 -26.50144 -22.54846 -22.01820 -21.71517 -19.08246 -17.76877 -17.41517 -17.06119 -16.49432 -16.24958 -15.73190 -15.33458 -14.70400 -14.13354 -13.88726 -13.79308 -13.67252 -13.30558 -12.87934 -12.74220 -12.48275 -12.22142 -12.09290 -12.05953 -11.78464 -11.41175 -11.05182 -10.12629 -9.44332 -8.79866 -8.41218 -6.36596 0.72507 0.83078 1.39165 1.47396 1.55448 2.19868 2.58245 3.23111 3.47259 3.66060 4.01711 4.11012 4.26024 4.46792 4.54044 4.74907 4.84014 4.91411 4.97349 5.07286 5.21149 5.30581 5.39682 5.46218 5.62554 5.77640 5.83409 6.24836 6.29908 6.56240 6.69101 6.85606 6.99366 8.26982 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.011536 C = 0.007941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.873072 B = 2426.646904 C = 3525.205842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.085 0.915 4 C -0.094 4.094 5 C -0.107 4.107 6 C -0.248 4.248 7 C 0.079 3.921 8 F -0.166 7.166 9 C -0.217 4.217 10 C 0.110 3.890 11 C -0.468 4.468 12 H 0.085 0.915 13 C 0.032 3.968 14 N -0.823 5.823 15 Si 0.986 3.014 16 H -0.256 1.256 17 H -0.264 1.264 18 H -0.267 1.267 19 C -0.037 4.037 20 N -0.622 5.622 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.290 0.710 29 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.708 4.491 -2.608 8.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.103 0.897 4 C -0.132 4.132 5 C -0.110 4.110 6 C -0.268 4.268 7 C 0.060 3.940 8 F -0.145 7.145 9 C -0.238 4.238 10 C 0.105 3.895 11 C -0.496 4.496 12 H 0.103 0.897 13 C -0.183 4.183 14 N -0.448 5.448 15 Si 0.807 3.193 16 H -0.180 1.180 17 H -0.188 1.188 18 H -0.191 1.191 19 C -0.135 4.135 20 N -0.251 5.251 21 H 0.087 0.913 22 H 0.107 0.893 23 H 0.077 0.923 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.101 0.899 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.326 4.806 -2.215 8.247 hybrid contribution 0.607 -1.105 0.034 1.262 sum -5.719 3.700 -2.181 7.152 Atomic orbital electron populations 1.21886 0.91418 1.02737 1.03703 1.22652 0.96414 0.97405 0.86552 0.89730 1.21789 0.93280 0.98995 0.99144 1.20811 0.96387 0.99185 0.94638 1.19720 0.96642 1.11807 0.98658 1.17685 0.85730 0.99364 0.91227 1.91314 1.56191 1.82992 1.83974 1.20966 1.01284 1.10212 0.91310 1.17171 0.88297 0.90136 0.93850 1.19725 1.27386 1.11378 0.91144 0.89724 1.26886 0.92332 0.93057 1.06068 1.69902 1.28219 1.06118 1.40581 0.85093 0.78887 0.79777 0.75587 1.17958 1.18827 1.19141 1.19556 0.94719 1.07150 0.92114 1.58113 1.04064 1.28276 1.34651 0.91298 0.89327 0.92335 0.89474 0.88981 0.86155 0.86963 0.89924 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.21 71.98 0.66 -2.35 15 2 C 0.08 2.38 4.20 45.27 0.19 2.57 15 3 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 4 C -0.09 -3.00 6.59 30.70 0.20 -2.80 15 5 C -0.11 -4.68 6.23 -19.50 -0.12 -4.80 15 6 C -0.25 -11.44 10.01 22.43 0.22 -11.22 15 7 C 0.08 4.09 7.29 22.34 0.16 4.25 15 8 F -0.17 -8.17 17.26 44.97 0.78 -7.39 15 9 C -0.22 -12.03 8.63 22.69 0.20 -11.83 15 10 C 0.11 5.98 5.59 -21.10 -0.12 5.86 15 11 C -0.47 -25.04 8.98 23.36 0.21 -24.83 15 12 H 0.08 4.45 7.90 -2.91 -0.02 4.43 15 13 C 0.03 1.61 5.14 85.24 0.44 2.05 15 14 N -0.82 -43.34 10.96 21.82 0.24 -43.10 15 15 Si 0.99 38.15 29.59 68.60 2.03 40.18 15 16 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 17 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 18 H -0.27 -10.01 7.11 99.48 0.71 -9.31 15 19 C -0.04 -1.79 6.53 39.04 0.26 -1.54 15 20 N -0.62 -24.85 6.98 -311.44 -2.17 -27.03 15 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.06 1.24 8.11 -2.39 -0.02 1.22 15 24 H 0.09 2.50 7.90 -2.39 -0.02 2.48 15 25 H 0.09 2.55 8.14 -2.38 -0.02 2.53 15 26 H 0.12 4.89 8.06 -2.91 -0.02 4.86 15 27 H 0.11 6.54 6.18 -2.91 -0.02 6.52 15 28 H 0.29 13.77 8.30 -92.70 -0.77 13.00 15 29 H 0.34 12.81 8.37 -89.69 -0.75 12.06 15 Total: -1.00 -60.36 251.89 3.59 -56.76 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.42 Total: 25.21 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 2.30 Total: -44.63 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.94 Total: -70.13 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 0.78 Total: -7.39 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -60.36 3.59 -56.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713742506.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.622 kcal (2) G-P(sol) polarization free energy of solvation -60.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds