Wall clock time and date at job start Mon Mar 30 2020 04:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.70868 * 2 1 4 4 C 1.54348 * 110.57760 * 123.50675 * 2 1 3 5 5 C 1.51635 * 102.79021 * 93.29910 * 4 2 1 6 6 C 1.38022 * 131.45376 * 195.44970 * 5 4 2 7 7 C 1.39131 * 120.62565 * 179.34503 * 6 5 4 8 8 F 1.35092 * 119.91110 * 179.97438 * 7 6 5 9 9 C 1.37630 * 120.16883 * 359.97045 * 7 6 5 10 10 C 1.40539 * 119.98058 * 0.06445 * 9 7 6 11 11 C 1.41035 * 120.16532 * 180.15748 * 10 9 7 12 12 H 1.07997 * 120.00092 * 205.50135 * 11 10 9 13 13 C 1.39918 * 119.99948 * 25.50882 * 11 10 9 14 14 N 1.30890 * 120.00095 * 26.90996 * 13 11 10 15 15 Si 1.86802 * 119.99913 * 206.91379 * 13 11 10 16 16 H 1.48500 * 109.47030 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47011 * 239.99545 * 15 13 11 18 18 H 1.48502 * 109.47306 * 119.99740 * 15 13 11 19 19 C 1.38738 * 107.89014 * 15.32884 * 5 4 2 20 20 N 1.39141 * 111.17689 * 1.26638 * 19 5 4 21 21 H 1.08998 * 109.47049 * 181.88504 * 1 2 3 22 22 H 1.09000 * 109.46980 * 301.87966 * 1 2 3 23 23 H 1.08996 * 109.47536 * 61.88037 * 1 2 3 24 24 H 1.09003 * 111.19323 * 334.74510 * 4 2 1 25 25 H 1.09005 * 110.25693 * 211.41465 * 4 2 1 26 26 H 1.07997 * 119.68976 * 359.37176 * 6 5 4 27 27 H 1.08002 * 120.00981 * 180.09489 * 9 7 6 28 28 H 0.96993 * 119.99694 * 4.08011 * 14 13 11 29 29 H 1.00894 * 111.00329 * 103.36114 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9154 1.0196 0.0000 4 6 2.0725 -0.7977 1.2049 5 6 2.2701 -2.1856 0.6270 6 6 2.4616 -3.4098 1.2351 7 6 2.6079 -4.5646 0.4730 8 9 2.7950 -5.7552 1.0832 9 6 2.5623 -4.4970 -0.9009 10 6 2.3690 -3.2588 -1.5371 11 6 2.3183 -3.1856 -2.9446 12 1 2.5807 -2.2664 -3.4473 13 6 1.9280 -4.3036 -3.6898 14 7 1.1357 -5.1999 -3.1587 15 14 2.5377 -4.5171 -5.4425 16 1 3.4136 -3.3739 -5.8046 17 1 1.3773 -4.5637 -6.3681 18 1 3.3064 -5.7833 -5.5485 19 6 2.2307 -2.0811 -0.7559 20 7 2.0551 -0.7599 -1.1553 21 1 -0.3633 -1.0271 0.0338 22 1 -0.3633 0.5428 0.8727 23 1 -0.3634 0.4843 -0.9063 24 1 1.3505 -0.8181 2.0212 25 1 3.0222 -0.3790 1.5380 26 1 2.4977 -3.4720 2.3127 27 1 2.6747 -5.3952 -1.4899 28 1 0.7717 -5.0601 -2.2706 29 1 2.9224 -0.3634 -1.4848 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713742507.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:39 Heat of formation + Delta-G solvation = -49.819306 kcal Electronic energy + Delta-G solvation = -14828.235740 eV Core-core repulsion = 12242.980337 eV Total energy + Delta-G solvation = -2585.255403 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.71477 -41.11336 -37.64779 -35.42178 -32.46526 -31.12961 -29.60886 -27.51792 -26.70839 -22.93980 -22.09789 -21.41463 -19.66592 -17.99215 -17.46401 -16.97520 -16.45854 -16.26574 -15.75423 -15.17451 -14.95732 -14.62007 -14.25781 -13.72752 -13.29304 -13.27658 -12.99839 -12.73088 -12.43728 -12.23351 -12.07936 -11.95034 -11.84602 -11.33987 -10.89663 -10.28816 -9.63934 -9.31732 -8.60964 -6.44198 0.60306 0.71756 1.50485 1.61810 1.79592 2.30709 2.52536 3.13566 3.29933 3.55146 3.85513 4.09667 4.20900 4.35497 4.49748 4.67015 4.72936 4.81203 4.91127 5.04225 5.15986 5.30866 5.34458 5.37962 5.59642 5.67509 5.74776 6.02306 6.16090 6.29759 6.59444 6.78362 6.89807 7.95819 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.011765 C = 0.008559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.484290 B = 2379.331979 C = 3270.584199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.080 3.920 3 H 0.118 0.882 4 C -0.096 4.096 5 C -0.097 4.097 6 C -0.258 4.258 7 C 0.101 3.899 8 F -0.163 7.163 9 C -0.275 4.275 10 C 0.098 3.902 11 C -0.519 4.519 12 H 0.083 0.917 13 C 0.000 4.000 14 N -0.811 5.811 15 Si 1.122 2.878 16 H -0.258 1.258 17 H -0.267 1.267 18 H -0.269 1.269 19 C -0.030 4.030 20 N -0.623 5.623 21 H 0.022 0.978 22 H 0.087 0.913 23 H 0.059 0.941 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.282 0.718 29 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 8.645 3.078 9.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 H 0.136 0.864 4 C -0.133 4.133 5 C -0.101 4.101 6 C -0.279 4.279 7 C 0.082 3.918 8 F -0.142 7.142 9 C -0.296 4.296 10 C 0.094 3.906 11 C -0.546 4.546 12 H 0.101 0.899 13 C -0.217 4.217 14 N -0.433 5.433 15 Si 0.939 3.061 16 H -0.182 1.182 17 H -0.191 1.191 18 H -0.194 1.194 19 C -0.128 4.128 20 N -0.252 5.252 21 H 0.041 0.959 22 H 0.105 0.895 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.140 0.860 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.685 7.525 1.469 7.698 hybrid contribution 0.644 0.144 2.119 2.219 sum 1.329 7.670 3.588 8.571 Atomic orbital electron populations 1.21683 0.94012 1.00526 1.02535 1.22562 0.96463 0.97392 0.86444 0.86428 1.21740 1.02478 0.90013 0.99110 1.20847 0.99529 0.95092 0.94582 1.19696 1.18845 0.90577 0.98765 1.17569 1.03101 0.80318 0.90840 1.91328 1.93311 1.45676 1.83896 1.20712 1.17827 0.98918 0.92118 1.17187 0.90482 0.89118 0.93838 1.20630 1.41190 1.01139 0.91666 0.89889 1.28579 0.91770 0.90732 1.10616 1.70559 1.19327 1.35198 1.18204 0.82951 0.77191 0.77903 0.68054 1.18194 1.19143 1.19442 1.19498 1.10587 0.90862 0.91885 1.57965 1.32415 0.99688 1.35101 0.95917 0.89452 0.92202 0.88869 0.88991 0.85983 0.88507 0.90550 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.48 71.98 0.68 -3.06 15 2 C 0.08 2.35 4.12 45.18 0.19 2.53 15 3 H 0.12 2.57 8.14 -2.39 -0.02 2.55 15 4 C -0.10 -2.93 6.55 30.60 0.20 -2.73 15 5 C -0.10 -4.12 6.23 -19.50 -0.12 -4.24 15 6 C -0.26 -11.66 10.01 22.43 0.22 -11.44 15 7 C 0.10 5.10 7.29 22.34 0.16 5.26 15 8 F -0.16 -7.89 17.26 44.97 0.78 -7.12 15 9 C -0.27 -14.95 7.91 22.69 0.18 -14.77 15 10 C 0.10 5.26 5.31 -21.10 -0.11 5.14 15 11 C -0.52 -27.63 8.90 23.36 0.21 -27.42 15 12 H 0.08 4.30 7.97 -2.91 -0.02 4.27 15 13 C 0.00 -0.01 4.89 85.24 0.42 0.41 15 14 N -0.81 -44.72 12.38 21.83 0.27 -44.45 15 15 Si 1.12 43.22 30.01 68.60 2.06 45.28 15 16 H -0.26 -9.13 7.11 99.48 0.71 -8.43 15 17 H -0.27 -9.75 7.11 99.48 0.71 -9.04 15 18 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 19 C -0.03 -1.43 6.49 39.03 0.25 -1.18 15 20 N -0.62 -24.15 6.76 -311.85 -2.11 -26.26 15 21 H 0.02 0.79 8.14 -2.39 -0.02 0.77 15 22 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.09 2.53 7.92 -2.39 -0.02 2.51 15 25 H 0.09 2.42 8.14 -2.38 -0.02 2.40 15 26 H 0.12 4.85 8.06 -2.91 -0.02 4.82 15 27 H 0.10 5.57 6.53 -2.91 -0.02 5.55 15 28 H 0.28 16.45 6.73 -92.71 -0.62 15.82 15 29 H 0.34 12.01 8.85 -89.70 -0.79 11.21 15 Total: -1.00 -61.22 251.69 3.80 -57.42 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.52 Total: 26.59 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 2.28 Total: -51.47 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.84 Total: -70.71 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.78 Total: -7.12 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.06 Total: 45.28 kcal Total: -61.22 3.80 -57.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713742507.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.605 kcal (2) G-P(sol) polarization free energy of solvation -61.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds