Wall clock time and date at job start Mon Mar 30 2020 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38549 * 120.01258 * 2 1 4 4 C 1.40077 * 117.81558 * 180.02562 * 3 2 1 5 5 C 1.48131 * 121.14600 * 179.97438 * 4 3 2 6 6 O 1.21513 * 119.99892 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00066 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00259 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47452 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00033 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99951 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99969 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99760 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47241 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47058 * 119.99985 * 13 11 9 16 16 H 1.48499 * 109.47400 * 239.99791 * 13 11 9 17 17 C 1.39763 * 117.70811 * 0.02562 * 4 3 2 18 18 N 1.31894 * 119.65827 * 359.97438 * 17 4 3 19 19 N 1.28284 * 122.32680 * 359.97438 * 18 17 4 20 20 H 1.08998 * 109.47434 * 269.97597 * 1 2 3 21 21 H 1.09001 * 109.46885 * 29.98003 * 1 2 3 22 22 H 1.09004 * 109.47045 * 149.97737 * 1 2 3 23 23 H 1.07992 * 121.09374 * 0.02562 * 3 2 1 24 24 H 0.96997 * 120.00284 * 359.97438 * 7 5 4 25 25 H 1.09001 * 109.46851 * 300.00223 * 8 7 5 26 26 H 1.09004 * 109.46924 * 59.99903 * 8 7 5 27 27 H 0.97001 * 119.99921 * 179.97438 * 12 11 9 28 28 H 1.08003 * 120.17263 * 180.02562 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4140 2.3835 -0.0012 6 8 3.8688 3.4695 -0.0007 7 7 5.7594 2.3049 -0.0022 8 6 6.5647 3.5288 -0.0034 9 6 8.0277 3.1675 -0.0038 10 1 8.3278 2.1301 -0.0036 11 6 8.9833 4.1615 -0.0043 12 7 8.6179 5.4249 -0.0050 13 14 10.7967 3.7137 -0.0055 14 1 10.9417 2.2358 -0.0051 15 1 11.4443 4.2747 -1.2184 16 1 11.4460 4.2745 1.2066 17 6 4.2017 -0.1153 -0.0016 18 7 3.4484 -1.1980 -0.0016 19 7 2.1668 -1.1419 -0.0001 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6782 2.1452 0.0004 24 1 6.1946 1.4381 -0.0022 25 1 6.3344 4.1143 -0.8934 26 1 6.3358 4.1151 0.8866 27 1 9.2901 6.1241 -0.0050 28 1 5.2781 -0.2031 -0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787623414.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:15 Heat of formation + Delta-G solvation = -13.586109 kcal Electronic energy + Delta-G solvation = -13988.899069 eV Core-core repulsion = 11425.134817 eV Total energy + Delta-G solvation = -2563.764252 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.33934 -40.42255 -36.37702 -35.09167 -34.67636 -33.99961 -29.60637 -29.27158 -26.43566 -24.99621 -24.16446 -21.73031 -19.63198 -18.69989 -18.12587 -17.27077 -16.88675 -16.67646 -16.29614 -15.91582 -15.35108 -14.63273 -14.46797 -14.08189 -14.04171 -13.77210 -13.22290 -12.94839 -12.77673 -12.25568 -12.10650 -11.57955 -11.46722 -11.38475 -10.85567 -10.82727 -10.74062 -10.00247 -8.31495 -6.47690 -0.80950 -0.26322 1.44392 1.44457 1.57974 1.64183 2.06075 2.40051 2.49461 2.90424 3.04511 3.20229 3.39841 3.53483 3.73955 4.12334 4.35956 4.67769 4.77121 4.84173 4.99624 5.05677 5.18880 5.27243 5.33578 5.57107 5.79394 6.57757 6.66577 7.10375 7.27688 7.49612 8.80655 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.059117 B = 0.005556 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.526163 B = 5038.464304 C = 5491.544785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.072 3.928 3 C -0.058 4.058 4 C -0.129 4.129 5 C 0.547 3.453 6 O -0.579 6.579 7 N -0.691 5.691 8 C 0.264 3.736 9 C -0.557 4.557 10 H 0.086 0.914 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.982 3.018 14 H -0.253 1.253 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.068 3.932 18 N -0.258 5.258 19 N -0.254 5.254 20 H 0.102 0.898 21 H 0.102 0.898 22 H 0.092 0.908 23 H 0.174 0.826 24 H 0.410 0.590 25 H -0.002 1.002 26 H -0.002 1.002 27 H 0.269 0.731 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 -11.000 0.033 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.073 4.073 3 C -0.089 4.089 4 C -0.144 4.144 5 C 0.332 3.668 6 O -0.460 6.460 7 N -0.340 5.340 8 C 0.142 3.858 9 C -0.595 4.595 10 H 0.104 0.896 11 C -0.193 4.193 12 N -0.567 5.567 13 Si 0.806 3.194 14 H -0.176 1.176 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.098 4.098 18 N -0.097 5.097 19 N -0.098 5.098 20 H 0.121 0.879 21 H 0.121 0.879 22 H 0.111 0.889 23 H 0.191 0.809 24 H 0.247 0.753 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.078 0.922 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.567 -11.724 0.030 16.470 hybrid contribution 1.353 1.657 0.009 2.139 sum -10.214 -10.067 0.039 14.341 Atomic orbital electron populations 1.20885 0.83754 1.05697 1.05307 1.23488 1.01189 0.88610 0.94008 1.22772 0.92667 1.01698 0.91721 1.21226 0.95892 0.94461 1.02774 1.18394 0.82900 0.88249 0.77248 1.90733 1.72605 1.30328 1.52327 1.46144 1.05037 1.11821 1.71029 1.18712 0.89877 0.82201 0.95006 1.21627 0.90198 0.94620 1.53069 0.89602 1.26003 1.05035 0.94468 0.93821 1.70121 1.36149 1.00599 1.49810 0.85139 0.77369 0.79283 0.77631 1.17634 1.20545 1.20549 1.24802 1.03622 0.87925 0.93433 1.72998 0.99692 1.27232 1.09804 1.72742 1.02001 1.26174 1.08838 0.87944 0.87913 0.88946 0.80897 0.75324 0.98446 0.98452 0.92174 0.78608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.19 71.24 0.73 -0.51 15 2 C 0.07 1.59 6.86 42.63 0.29 1.88 15 3 C -0.06 -1.47 9.43 22.79 0.22 -1.25 15 4 C -0.13 -3.86 5.92 -19.83 -0.12 -3.97 15 5 C 0.55 21.22 7.80 86.87 0.68 21.89 15 6 O -0.58 -26.97 16.49 -3.76 -0.06 -27.03 15 7 N -0.69 -27.81 5.51 -469.43 -2.59 -30.40 15 8 C 0.26 13.79 5.43 85.63 0.46 14.26 15 9 C -0.56 -29.08 9.28 25.60 0.24 -28.84 15 10 H 0.09 4.03 7.60 -2.91 -0.02 4.01 15 11 C 0.01 0.36 5.46 84.66 0.46 0.83 15 12 N -0.93 -54.26 13.29 21.45 0.28 -53.98 15 13 Si 0.98 41.18 29.54 68.60 2.03 43.20 15 14 H -0.25 -9.79 7.11 99.48 0.71 -9.09 15 15 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15 16 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15 17 C 0.07 1.80 10.84 85.05 0.92 2.72 15 18 N -0.26 -7.37 11.49 -56.53 -0.65 -8.02 15 19 N -0.25 -6.87 11.40 -47.69 -0.54 -7.41 15 20 H 0.10 1.00 8.14 -2.39 -0.02 0.98 15 21 H 0.10 0.90 8.09 -2.39 -0.02 0.88 15 22 H 0.09 1.05 8.14 -2.39 -0.02 1.03 15 23 H 0.17 3.89 7.80 -2.91 -0.02 3.86 15 24 H 0.41 13.40 6.48 -92.71 -0.60 12.80 15 25 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 15 26 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 15 27 H 0.27 14.69 8.31 -92.71 -0.77 13.92 15 28 H 0.20 4.18 6.54 -2.91 -0.02 4.16 15 Total: -1.00 -69.09 257.62 2.94 -66.15 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.59 Total: 10.47 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 3.88 Total: 7.02 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -3.49 Total: -99.80 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.06 Total: -27.03 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Total: -69.09 2.94 -66.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787623414.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.562 kcal (2) G-P(sol) polarization free energy of solvation -69.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds