Wall clock time and date at job start Mon Mar 30 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38828 * 120.41495 * 2 1 4 4 C 1.38775 * 118.50568 * 179.97438 * 3 2 1 5 5 N 1.32123 * 119.16617 * 359.97438 * 4 3 2 6 6 C 1.32451 * 120.77123 * 0.02562 * 5 4 3 7 7 C 1.48533 * 119.18964 * 180.02562 * 6 5 4 8 8 O 1.21463 * 120.00199 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99763 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00087 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47501 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99844 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00018 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99930 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99687 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47220 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47397 * 120.00119 * 15 13 11 18 18 H 1.48505 * 109.47020 * 239.99743 * 15 13 11 19 19 N 1.32094 * 120.41788 * 179.71821 * 2 1 3 20 20 H 1.08999 * 109.47015 * 90.00438 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99590 * 1 2 3 22 22 H 1.09000 * 109.47248 * 330.00308 * 1 2 3 23 23 H 1.08000 * 120.74407 * 359.95344 * 3 2 1 24 24 H 1.07996 * 120.41743 * 179.97438 * 4 3 2 25 25 H 0.97000 * 120.00191 * 359.97438 * 9 7 6 26 26 H 1.09010 * 109.46864 * 299.99777 * 10 9 7 27 27 H 1.09000 * 109.47129 * 59.99065 * 10 9 7 28 28 H 0.97005 * 119.99791 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5969 1.1510 0.0005 5 7 4.2020 -0.0235 0.0016 6 6 3.5006 -1.1471 0.0015 7 6 4.2171 -2.4483 0.0033 8 8 3.5886 -3.4876 0.0028 9 7 5.5646 -2.4755 0.0054 10 6 6.2713 -3.7588 0.0065 11 6 7.7582 -3.5135 0.0082 12 1 8.1387 -2.5028 0.0079 13 6 8.6327 -4.5794 0.0100 14 7 8.1693 -5.8102 0.0108 15 14 10.4758 -4.2753 0.0113 16 1 10.7362 -2.8134 0.0095 17 1 11.0771 -4.8842 1.2249 18 1 11.0792 -4.8867 -1.2001 19 7 2.1759 -1.1391 0.0056 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6889 2.1433 -0.0008 24 1 4.1744 2.0636 0.0001 25 1 6.0665 -1.6455 0.0054 26 1 5.9950 -4.3249 0.8962 27 1 5.9977 -4.3250 -0.8838 28 1 8.7846 -6.5601 0.0117 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792489507.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:10 Heat of formation + Delta-G solvation = 7.192240 kcal Electronic energy + Delta-G solvation = -14010.544578 eV Core-core repulsion = 11447.681342 eV Total energy + Delta-G solvation = -2562.863236 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.14940 -38.43644 -34.71051 -34.10509 -32.62275 -32.24071 -28.81790 -27.47538 -25.13165 -23.15957 -22.47069 -20.03806 -17.96894 -17.65018 -16.16642 -15.69885 -15.44110 -15.04008 -14.73807 -14.07760 -14.05962 -13.44036 -13.06363 -12.86631 -12.52311 -11.96268 -11.79814 -11.17389 -10.94496 -10.89938 -10.64990 -10.30477 -9.61759 -9.40379 -9.31536 -9.28080 -8.73070 -7.90762 -6.14910 -4.21437 0.53428 1.02017 3.08556 3.26127 3.31050 3.34784 3.40795 3.99284 4.08075 4.29639 4.34680 4.62595 4.86539 4.92783 5.21502 5.21846 5.32163 5.45311 5.60715 5.75193 6.25053 6.92479 7.26134 7.35952 7.49781 7.65704 7.94335 8.00304 8.60383 8.76057 9.01951 9.44463 10.95431 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.059089 B = 0.005652 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.748460 B = 4952.865825 C = 5406.168066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 C -0.222 4.222 4 C 0.146 3.854 5 N -0.498 5.498 6 C 0.301 3.699 7 C 0.562 3.438 8 O -0.521 6.521 9 N -0.683 5.683 10 C 0.247 3.753 11 C -0.542 4.542 12 H 0.066 0.934 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.905 3.095 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 N -0.473 5.473 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.149 0.851 24 H 0.173 0.827 25 H 0.402 0.598 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.931 15.905 -0.044 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.020 3.980 3 C -0.245 4.245 4 C -0.020 4.020 5 N -0.215 5.215 6 C 0.031 3.969 7 C 0.341 3.659 8 O -0.395 6.395 9 N -0.332 5.332 10 C 0.127 3.873 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.733 3.267 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 N -0.189 5.189 20 H 0.104 0.896 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.167 0.833 24 H 0.190 0.810 25 H 0.237 0.763 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.804 14.005 -0.035 17.688 hybrid contribution 0.807 1.437 -0.016 1.648 sum -9.997 15.442 -0.050 18.396 Atomic orbital electron populations 1.20793 0.87527 1.04167 1.03796 1.21888 0.97906 0.88000 0.90191 1.22932 0.96697 1.00468 1.04363 1.23292 0.92136 0.96171 0.90377 1.68398 1.41596 0.98804 1.12732 1.23477 0.87260 0.93611 0.92537 1.17352 0.83292 0.85296 0.79953 1.90765 1.66998 1.31885 1.49866 1.46372 1.04201 1.12962 1.69715 1.19269 0.90745 0.79068 0.98182 1.21252 0.90127 0.93517 1.53110 0.91585 1.24950 0.99597 0.94802 0.94679 1.69988 1.35190 0.98143 1.48982 0.86329 0.84252 0.78450 0.77709 1.19551 1.20805 1.20809 1.68177 1.08935 1.30125 1.11625 0.89571 0.89624 0.90085 0.83309 0.80951 0.76275 0.94985 0.94996 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.22 36.01 0.37 -0.51 15 2 C 0.17 2.10 6.82 -82.26 -0.56 1.53 15 3 C -0.22 -2.17 9.87 -39.16 -0.39 -2.56 15 4 C 0.15 1.65 11.30 -17.23 -0.19 1.45 15 5 N -0.50 -7.97 9.58 -11.12 -0.11 -8.08 15 6 C 0.30 5.72 7.60 -157.06 -1.19 4.52 15 7 C 0.56 12.86 7.85 -12.01 -0.09 12.76 15 8 O -0.52 -13.67 16.86 5.40 0.09 -13.58 15 9 N -0.68 -15.76 5.54 -62.21 -0.34 -16.11 15 10 C 0.25 6.75 5.43 -5.19 -0.03 6.72 15 11 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 15 12 H 0.07 1.73 7.60 -52.49 -0.40 1.33 15 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 14 N -0.89 -26.27 13.29 55.43 0.74 -25.54 15 15 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 15 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 19 N -0.47 -8.32 10.07 -7.37 -0.07 -8.40 15 20 H 0.09 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.08 0.43 8.10 -51.93 -0.42 0.01 15 23 H 0.15 0.82 8.06 -52.49 -0.42 0.40 15 24 H 0.17 1.22 8.06 -52.49 -0.42 0.80 15 25 H 0.40 8.40 7.63 -40.82 -0.31 8.09 15 26 H 0.03 0.95 8.14 -51.92 -0.42 0.53 15 27 H 0.03 0.95 8.14 -51.93 -0.42 0.52 15 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 LS Contribution 260.32 15.07 3.92 3.92 Total: -1.00 -34.03 260.32 -6.10 -40.13 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -2.80 Total: 1.28 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -2.51 Total: 10.28 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.21 Total: -58.12 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.03 -6.10 -40.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792489507.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.323 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds