Wall clock time and date at job start Mon Mar 30 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38828 * 120.41495 * 2 1 4 4 C 1.38775 * 118.50568 * 179.97438 * 3 2 1 5 5 N 1.32123 * 119.16617 * 359.97438 * 4 3 2 6 6 C 1.32451 * 120.77123 * 0.02562 * 5 4 3 7 7 C 1.48533 * 119.18964 * 180.02562 * 6 5 4 8 8 O 1.21463 * 120.00199 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99763 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00087 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47501 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99844 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00018 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99930 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99687 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47220 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47397 * 120.00119 * 15 13 11 18 18 H 1.48505 * 109.47020 * 239.99743 * 15 13 11 19 19 N 1.32094 * 120.41788 * 179.71821 * 2 1 3 20 20 H 1.08999 * 109.47015 * 90.00438 * 1 2 3 21 21 H 1.09000 * 109.46646 * 209.99590 * 1 2 3 22 22 H 1.09000 * 109.47248 * 330.00308 * 1 2 3 23 23 H 1.08000 * 120.74407 * 359.95344 * 3 2 1 24 24 H 1.07996 * 120.41743 * 179.97438 * 4 3 2 25 25 H 0.97000 * 120.00191 * 359.97438 * 9 7 6 26 26 H 1.09010 * 109.46864 * 299.99777 * 10 9 7 27 27 H 1.09000 * 109.47129 * 59.99065 * 10 9 7 28 28 H 0.97005 * 119.99791 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5969 1.1510 0.0005 5 7 4.2020 -0.0235 0.0016 6 6 3.5006 -1.1471 0.0015 7 6 4.2171 -2.4483 0.0033 8 8 3.5886 -3.4876 0.0028 9 7 5.5646 -2.4755 0.0054 10 6 6.2713 -3.7588 0.0065 11 6 7.7582 -3.5135 0.0082 12 1 8.1387 -2.5028 0.0079 13 6 8.6327 -4.5794 0.0100 14 7 8.1693 -5.8102 0.0108 15 14 10.4758 -4.2753 0.0113 16 1 10.7362 -2.8134 0.0095 17 1 11.0771 -4.8842 1.2249 18 1 11.0792 -4.8867 -1.2001 19 7 2.1759 -1.1391 0.0056 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6889 2.1433 -0.0008 24 1 4.1744 2.0636 0.0001 25 1 6.0665 -1.6455 0.0054 26 1 5.9950 -4.3249 0.8962 27 1 5.9977 -4.3250 -0.8838 28 1 8.7846 -6.5601 0.0117 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792489507.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:09 Heat of formation + Delta-G solvation = -19.527751 kcal Electronic energy + Delta-G solvation = -14011.703244 eV Core-core repulsion = 11447.681342 eV Total energy + Delta-G solvation = -2564.021901 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.29291 -40.22481 -36.36107 -35.55005 -34.36112 -33.64796 -29.99675 -29.15168 -26.64711 -24.45456 -24.06833 -21.78451 -19.65628 -18.78676 -18.00531 -16.95396 -16.82367 -16.75331 -16.28085 -15.60675 -15.52477 -14.73920 -14.19272 -14.12657 -14.03716 -13.72922 -13.16398 -12.94069 -12.75494 -12.32933 -12.17934 -11.74427 -11.49885 -11.12844 -10.84414 -10.58740 -10.38782 -9.95906 -8.30571 -6.47528 -0.60917 0.07622 1.43343 1.45134 1.58874 1.59655 1.86537 2.39018 2.77000 2.94864 3.04333 3.26743 3.54513 3.88455 4.06181 4.33894 4.59576 4.72812 4.79216 5.01177 5.07802 5.16586 5.36597 5.39687 5.59233 5.78631 5.95238 6.55824 6.62881 6.97013 7.13902 7.28826 8.82068 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.059089 B = 0.005652 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.748460 B = 4952.865825 C = 5406.168066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.146 3.854 3 C -0.182 4.182 4 C 0.138 3.862 5 N -0.513 5.513 6 C 0.270 3.730 7 C 0.559 3.441 8 O -0.570 6.570 9 N -0.679 5.679 10 C 0.264 3.736 11 C -0.557 4.557 12 H 0.083 0.917 13 C 0.005 3.995 14 N -0.929 5.929 15 Si 0.989 3.011 16 H -0.254 1.254 17 H -0.277 1.277 18 H -0.277 1.277 19 N -0.511 5.511 20 H 0.099 0.901 21 H 0.068 0.932 22 H 0.121 0.879 23 H 0.208 0.792 24 H 0.222 0.778 25 H 0.414 0.586 26 H -0.004 1.004 27 H -0.004 1.004 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.838 19.917 -0.054 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.000 4.000 3 C -0.203 4.203 4 C -0.026 4.026 5 N -0.231 5.231 6 C 0.000 4.000 7 C 0.342 3.658 8 O -0.447 6.447 9 N -0.329 5.329 10 C 0.142 3.858 11 C -0.595 4.595 12 H 0.101 0.899 13 C -0.195 4.195 14 N -0.568 5.568 15 Si 0.811 3.189 16 H -0.177 1.177 17 H -0.202 1.202 18 H -0.202 1.202 19 N -0.228 5.228 20 H 0.118 0.882 21 H 0.087 0.913 22 H 0.140 0.860 23 H 0.225 0.775 24 H 0.238 0.762 25 H 0.251 0.749 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.734 18.082 -0.044 21.028 hybrid contribution 0.599 0.337 -0.013 0.688 sum -10.135 18.420 -0.058 21.024 Atomic orbital electron populations 1.20953 0.84622 1.05372 1.04991 1.22723 0.99783 0.87656 0.89830 1.23556 0.96085 1.01580 0.99065 1.24202 0.93624 0.95744 0.89070 1.68292 1.42202 0.99472 1.13117 1.22283 0.87826 0.92418 0.97464 1.17998 0.82922 0.86936 0.77975 1.90707 1.67886 1.34453 1.51691 1.46068 1.04709 1.11832 1.70280 1.18755 0.91747 0.80429 0.94848 1.21589 0.90027 0.94557 1.53301 0.89876 1.26081 1.05496 0.94244 0.93652 1.70143 1.37472 0.99434 1.49715 0.85054 0.76774 0.79234 0.77807 1.17701 1.20240 1.20246 1.68036 1.08556 1.33454 1.12762 0.88218 0.91255 0.86038 0.77518 0.76204 0.74870 0.98596 0.98598 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.22 71.24 0.73 -0.65 15 2 C 0.15 3.27 6.82 42.66 0.29 3.56 15 3 C -0.18 -2.62 9.87 22.54 0.22 -2.40 15 4 C 0.14 2.55 11.30 84.78 0.96 3.50 15 5 N -0.51 -15.78 9.58 -189.10 -1.81 -17.59 15 6 C 0.27 10.46 7.60 137.68 1.05 11.50 15 7 C 0.56 27.23 7.85 86.99 0.68 27.91 15 8 O -0.57 -32.32 16.86 -3.60 -0.06 -32.39 15 9 N -0.68 -33.04 5.54 -469.04 -2.60 -35.64 15 10 C 0.26 15.37 5.43 85.63 0.46 15.83 15 11 C -0.56 -31.58 9.28 25.60 0.24 -31.34 15 12 H 0.08 4.32 7.60 -2.91 -0.02 4.30 15 13 C 0.01 0.28 5.46 84.66 0.46 0.75 15 14 N -0.93 -56.97 13.29 21.45 0.28 -56.68 15 15 Si 0.99 43.22 29.54 68.60 2.03 45.25 15 16 H -0.25 -10.30 7.11 99.48 0.71 -9.59 15 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 19 N -0.51 -18.10 10.07 -177.23 -1.78 -19.88 15 20 H 0.10 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.07 1.18 8.14 -2.39 -0.02 1.16 15 22 H 0.12 0.64 8.10 -2.39 -0.02 0.62 15 23 H 0.21 0.60 8.06 -2.91 -0.02 0.58 15 24 H 0.22 1.82 8.06 -2.91 -0.02 1.79 15 25 H 0.41 17.81 7.63 -92.71 -0.71 17.10 15 26 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 15 27 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 15 28 H 0.27 15.34 8.31 -92.70 -0.77 14.57 15 Total: -1.00 -81.04 260.32 1.63 -79.42 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.48 Total: 8.85 kcal Atomic # 6 Polarization: 23.58 SS G_CDS: 5.09 Total: 28.67 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -5.91 Total: -129.80 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.06 Total: -32.39 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -81.04 1.63 -79.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792489507.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.888 kcal (2) G-P(sol) polarization free energy of solvation -81.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds