Wall clock time and date at job start Mon Mar 30 2020 03:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 119.99838 * 2 1 4 4 H 1.48497 * 109.47369 * 239.99979 * 3 2 1 5 5 H 1.48504 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47166 * 119.99785 * 3 2 1 7 7 C 1.38976 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99981 * 179.97438 * 7 2 1 9 9 N 1.36954 * 120.00657 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00125 * 180.02562 * 9 7 2 11 11 O 1.21648 * 120.00486 * 359.97438 * 10 9 7 12 12 C 1.47240 * 119.99720 * 179.97438 * 10 9 7 13 13 C 1.36394 * 126.21598 * 180.02562 * 12 10 9 14 14 N 1.36295 * 106.81049 * 179.91067 * 13 12 10 15 15 C 1.35695 * 107.62056 * 0.16969 * 14 13 12 16 16 N 1.30599 * 108.94557 * 359.77150 * 15 14 13 17 17 C 1.51609 * 109.81205 * 179.78789 * 15 14 13 18 18 C 1.54509 * 104.27640 * 343.35139 * 17 15 14 19 19 C 1.47068 * 141.37031 * 180.23553 * 14 13 12 20 20 H 0.96999 * 120.00611 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99765 * 359.97438 * 9 7 2 22 22 H 1.07996 * 126.59851 * 359.93900 * 13 12 10 23 23 H 1.08995 * 110.47205 * 224.65381 * 17 15 14 24 24 H 1.08998 * 110.58353 * 102.10030 * 17 15 14 25 25 H 1.09002 * 110.94604 * 267.21388 * 18 17 15 26 26 H 1.09003 * 110.94672 * 143.51846 * 18 17 15 27 27 H 1.09000 * 110.22394 * 78.08251 * 19 14 13 28 28 H 1.08992 * 110.22243 * 316.13539 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2036 -0.0005 8 1 3.0890 -1.2036 -0.0010 9 7 1.3243 -2.3897 -0.0016 10 6 1.9982 -3.5568 -0.0016 11 8 3.2147 -3.5568 -0.0011 12 6 1.2620 -4.8320 -0.0022 13 6 1.8121 -6.0800 -0.0017 14 7 0.7772 -6.9669 -0.0005 15 6 -0.3762 -6.2522 -0.0040 16 7 -0.0861 -4.9789 -0.0024 17 6 -1.5643 -7.1940 -0.0081 18 6 -0.9703 -8.5548 -0.4356 19 6 0.5023 -8.4117 0.0044 20 1 -0.4851 0.8400 -0.0004 21 1 0.3543 -2.3897 -0.0016 22 1 2.8652 -6.3196 -0.0019 23 1 -2.3120 -6.8614 -0.7281 24 1 -2.0007 -7.2647 0.9882 25 1 -1.0432 -8.6901 -1.5147 26 1 -1.4566 -9.3753 0.0922 27 1 0.6373 -8.8176 1.0069 28 1 1.1576 -8.9223 -0.7011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843781315.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:28 Heat of formation + Delta-G solvation = 29.777759 kcal Electronic energy + Delta-G solvation = -14328.995420 eV Core-core repulsion = 11767.111565 eV Total energy + Delta-G solvation = -2561.883854 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.99760 -37.82273 -35.92023 -33.82516 -31.77510 -31.00993 -28.55068 -27.05117 -25.15058 -22.59681 -21.33045 -19.65259 -18.88441 -17.73559 -16.82780 -16.10484 -15.49003 -14.52557 -14.12587 -14.03951 -13.54044 -13.35415 -13.01297 -12.76326 -12.65951 -12.15829 -11.77576 -11.46929 -11.19773 -10.98579 -10.37104 -10.14913 -9.59542 -9.45804 -9.26261 -8.46309 -7.96395 -7.82949 -6.34293 -3.70722 2.21573 2.87850 3.01886 3.30962 3.33806 3.36131 3.89538 4.24383 4.36469 4.48628 4.60741 4.64645 5.07445 5.25064 5.27041 5.30901 5.47592 5.49289 5.66402 5.75311 5.99947 6.40742 6.55440 7.17759 7.31001 7.61202 8.14323 8.38680 8.76104 9.24659 9.69425 10.21861 10.82583 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.062942 B = 0.006268 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.746233 B = 4465.760450 C = 4877.540148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.105 0.895 9 N -0.534 5.534 10 C 0.511 3.489 11 O -0.605 6.605 12 C -0.009 4.009 13 C 0.017 3.983 14 N -0.489 5.489 15 C 0.172 3.828 16 N -0.452 5.452 17 C -0.037 4.037 18 C -0.129 4.129 19 C 0.105 3.895 20 H 0.273 0.727 21 H 0.403 0.597 22 H 0.180 0.820 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -16.649 -0.212 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.123 0.877 9 N -0.167 5.167 10 C 0.297 3.703 11 O -0.492 6.492 12 C -0.138 4.138 13 C -0.118 4.118 14 N -0.175 5.175 15 C -0.091 4.091 16 N -0.173 5.173 17 C -0.076 4.076 18 C -0.168 4.168 19 C -0.016 4.016 20 H 0.083 0.917 21 H 0.238 0.762 22 H 0.197 0.803 23 H 0.115 0.885 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.220 -15.936 -0.208 16.487 hybrid contribution 0.481 0.143 0.022 0.502 sum -3.739 -15.793 -0.187 16.231 Atomic orbital electron populations 1.69658 1.06018 1.28383 1.48828 1.25363 0.95646 0.99887 0.97073 0.85875 0.78746 0.80197 0.79123 1.19784 1.20912 1.19790 1.19759 0.93537 0.82283 1.47407 0.87699 1.41757 1.10074 1.04094 1.60796 1.16438 0.86283 0.81761 0.85831 1.90598 1.12801 1.86786 1.58985 1.21145 0.88590 0.94370 1.09741 1.22216 0.93088 0.87535 1.08912 1.46357 1.07940 1.07611 1.55591 1.24396 0.89025 0.88470 1.07224 1.70291 1.14061 1.14611 1.18306 1.20577 0.93258 0.89937 1.03850 1.22713 0.93231 0.97820 1.02986 1.22304 0.97921 0.78365 1.03047 0.91662 0.76198 0.80301 0.88549 0.88814 0.89555 0.88297 0.89533 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.05 55.50 0.72 -24.97 15 2 C 0.02 0.66 5.50 -17.46 -0.10 0.56 15 3 Si 0.93 21.78 29.55 -169.99 -5.02 16.76 15 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.30 -8.97 9.68 -14.99 -0.15 -9.11 15 8 H 0.11 3.20 7.15 -52.48 -0.38 2.82 15 9 N -0.53 -15.50 5.28 -12.01 -0.06 -15.57 15 10 C 0.51 14.17 7.76 -12.61 -0.10 14.07 15 11 O -0.60 -18.02 16.45 5.24 0.09 -17.93 15 12 C -0.01 -0.20 6.97 -83.20 -0.58 -0.78 15 13 C 0.02 0.33 11.78 -16.23 -0.19 0.13 15 14 N -0.49 -7.47 3.58 -111.83 -0.40 -7.87 15 15 C 0.17 2.90 8.58 -154.29 -1.32 1.58 15 16 N -0.45 -9.94 11.00 -6.96 -0.08 -10.02 15 17 C -0.04 -0.38 6.86 -26.64 -0.18 -0.56 15 18 C -0.13 -0.87 7.16 -25.23 -0.18 -1.05 15 19 C 0.11 0.94 7.77 -3.02 -0.02 0.92 15 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.40 11.69 7.61 -40.82 -0.31 11.38 15 22 H 0.18 3.07 8.06 -52.49 -0.42 2.65 15 23 H 0.10 0.91 8.14 -51.93 -0.42 0.48 15 24 H 0.09 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.09 0.53 8.14 -51.93 -0.42 0.11 15 26 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 15 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 15 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 15 LS Contribution 252.25 15.07 3.80 3.80 Total: -1.00 -35.98 252.25 -6.55 -42.54 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -2.78 Total: 7.51 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -2.82 Total: 5.76 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.18 Total: -58.43 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.09 Total: -17.93 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -35.98 -6.55 -42.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843781315.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.314 kcal (2) G-P(sol) polarization free energy of solvation -35.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds