Wall clock time and date at job start Mon Mar 30 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99484 * 2 1 4 4 H 1.48503 * 109.47165 * 270.00002 * 3 2 1 5 5 H 1.48492 * 109.47498 * 30.00102 * 3 2 1 6 6 H 1.48504 * 109.47142 * 150.00480 * 3 2 1 7 7 C 1.38812 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99668 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99807 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99998 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47189 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47911 * 305.01468 * 11 10 9 13 13 C 1.53098 * 109.47826 * 184.99773 * 11 10 9 14 14 C 1.53177 * 109.21356 * 182.37378 * 13 11 10 15 15 C 1.53311 * 108.96735 * 56.95427 * 14 13 11 16 16 F 1.39893 * 109.51211 * 183.13989 * 15 14 13 17 17 F 1.39905 * 109.55943 * 62.99895 * 15 14 13 18 18 C 1.53100 * 109.19441 * 303.05955 * 15 14 13 19 19 O 1.42899 * 109.48189 * 65.05648 * 11 10 9 20 20 H 0.97001 * 119.99888 * 359.97438 * 1 2 3 21 21 H 0.96999 * 119.99925 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.46834 * 59.99147 * 10 9 7 23 23 H 1.09003 * 109.46586 * 299.99986 * 10 9 7 24 24 H 1.09002 * 109.52244 * 302.31317 * 13 11 10 25 25 H 1.09004 * 109.52508 * 62.43846 * 13 11 10 26 26 H 1.09001 * 109.54414 * 176.87772 * 14 13 11 27 27 H 1.09002 * 109.54680 * 297.14715 * 14 13 11 28 28 H 1.09002 * 109.47233 * 297.62202 * 18 15 14 29 29 H 1.08999 * 109.48998 * 177.59482 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 -0.0011 11 6 5.6165 -2.1910 -0.0009 12 1 5.8660 -1.5441 -0.8419 13 6 6.3812 -3.5112 -0.1278 14 6 7.8857 -3.2300 -0.0673 15 6 8.2033 -2.4962 1.2408 16 9 9.5633 -2.1703 1.2754 17 9 7.8924 -3.3205 2.3276 18 6 7.3681 -1.2152 1.3149 19 8 5.9812 -1.5464 1.2212 20 1 -0.4850 0.8401 0.0004 21 1 3.8646 -0.3619 0.0004 22 1 3.8492 -3.0413 -0.8918 23 1 3.8486 -3.0432 0.8882 24 1 6.1013 -4.1744 0.6907 25 1 6.1370 -3.9837 -1.0793 26 1 8.4343 -4.1714 -0.1014 27 1 8.1747 -2.6072 -0.9139 28 1 7.6409 -0.5555 0.4912 29 1 7.5584 -0.7114 2.2625 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885555354.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:18 Heat of formation + Delta-G solvation = -138.180387 kcal Electronic energy + Delta-G solvation = -15592.954991 eV Core-core repulsion = 12573.098739 eV Total energy + Delta-G solvation = -3019.856252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.06527 -47.07199 -39.16672 -34.82337 -33.51726 -31.83464 -30.13710 -26.84785 -24.64773 -22.85911 -21.31061 -20.68383 -17.82961 -17.60576 -17.26819 -16.63020 -16.01613 -15.05793 -14.69526 -14.23848 -13.92537 -13.59771 -13.53208 -13.36125 -12.79907 -12.70612 -12.63071 -12.20252 -12.13115 -11.55180 -11.30968 -10.86674 -10.73625 -10.39554 -10.09132 -9.60709 -9.52076 -8.90204 -7.22253 -5.75169 -3.10658 3.39700 3.44993 3.47263 3.50159 3.59286 3.86774 4.18610 4.30287 4.61811 4.65725 4.93603 5.02693 5.25241 5.33647 5.41608 5.43126 5.54756 5.56920 5.77650 5.82086 6.04423 6.41019 6.59017 7.17243 7.99830 8.43441 9.22636 9.94915 10.14816 11.43141 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.050725 B = 0.007141 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.864776 B = 3920.118906 C = 4201.690909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.167 3.833 11 C 0.070 3.930 12 H 0.066 0.934 13 C -0.147 4.147 14 C -0.160 4.160 15 C 0.253 3.747 16 F -0.201 7.201 17 F -0.191 7.191 18 C 0.027 3.973 19 O -0.345 6.345 20 H 0.259 0.741 21 H 0.364 0.636 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.315 -5.171 -0.541 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.398 5.398 10 C 0.040 3.960 11 C 0.012 3.988 12 H 0.084 0.916 13 C -0.185 4.185 14 C -0.198 4.198 15 C 0.217 3.783 16 F -0.182 7.182 17 F -0.172 7.172 18 C -0.052 4.052 19 O -0.262 6.262 20 H 0.069 0.931 21 H 0.197 0.803 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 17.952 -5.231 -0.364 18.702 hybrid contribution 0.962 1.088 -0.032 1.453 sum 18.914 -4.142 -0.396 19.366 Atomic orbital electron populations 1.69705 1.05116 1.25846 1.57582 1.24656 0.95225 0.97232 1.01935 0.86550 0.79529 0.84902 0.77712 1.21142 1.21696 1.19984 1.19055 0.80525 0.94812 1.43066 0.89168 1.42612 1.04023 1.02059 1.91098 1.20653 0.85510 0.90160 0.99704 1.22721 0.97208 0.92232 0.86612 0.91614 1.22197 0.92228 0.99314 1.04792 1.22639 0.99305 1.02533 0.95346 1.21965 0.77700 0.92211 0.86440 1.92993 1.34784 1.93410 1.97048 1.93024 1.92676 1.74154 1.57374 1.23451 0.83453 0.92902 1.05402 1.88240 1.20559 1.78405 1.39039 0.93059 0.80334 0.93699 0.94424 0.89662 0.88963 0.89046 0.88655 0.90167 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.65 13.97 55.49 0.78 -28.88 15 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 15 3 Si 0.88 22.38 27.74 -169.99 -4.71 17.67 15 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 15 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 15 6 H -0.27 -6.63 6.52 56.52 0.37 -6.26 15 7 C -0.24 -7.04 10.47 -15.06 -0.16 -7.19 15 8 H 0.09 2.75 8.06 -52.49 -0.42 2.32 15 9 N -0.75 -18.22 5.35 -59.91 -0.32 -18.54 15 10 C 0.17 3.20 5.93 -4.05 -0.02 3.17 15 11 C 0.07 1.05 2.68 -26.69 -0.07 0.98 15 12 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 13 C -0.15 -1.69 5.28 -26.59 -0.14 -1.83 15 14 C -0.16 -1.61 5.56 -26.48 -0.15 -1.76 15 15 C 0.25 3.08 2.16 -26.52 -0.06 3.02 15 16 F -0.20 -2.46 17.07 2.25 0.04 -2.42 15 17 F -0.19 -2.74 16.68 2.25 0.04 -2.70 15 18 C 0.03 0.34 6.33 37.21 0.24 0.57 15 19 O -0.34 -5.71 10.32 -35.23 -0.36 -6.07 15 20 H 0.26 7.82 8.31 -40.82 -0.34 7.48 15 21 H 0.36 8.68 5.53 -40.82 -0.23 8.46 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.08 1.04 7.94 -51.93 -0.41 0.63 15 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 15 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 15 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 29 H 0.11 1.33 8.14 -51.93 -0.42 0.90 15 LS Contribution 250.75 15.07 3.78 3.78 Total: -1.00 -32.61 250.75 -4.84 -37.45 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.61 Total: 2.68 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.46 Total: -2.97 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.45 Total: -47.42 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.36 Total: -6.07 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.08 Total: -5.12 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.61 -4.84 -37.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885555354.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.727 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds