Wall clock time and date at job start Mon Mar 30 2020 03:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99484 * 2 1 4 4 H 1.48503 * 109.47165 * 270.00002 * 3 2 1 5 5 H 1.48492 * 109.47498 * 30.00102 * 3 2 1 6 6 H 1.48504 * 109.47142 * 150.00480 * 3 2 1 7 7 C 1.38812 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99668 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99807 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99998 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47189 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47911 * 305.01468 * 11 10 9 13 13 C 1.53098 * 109.47826 * 184.99773 * 11 10 9 14 14 C 1.53177 * 109.21356 * 182.37378 * 13 11 10 15 15 C 1.53311 * 108.96735 * 56.95427 * 14 13 11 16 16 F 1.39893 * 109.51211 * 183.13989 * 15 14 13 17 17 F 1.39905 * 109.55943 * 62.99895 * 15 14 13 18 18 C 1.53100 * 109.19441 * 303.05955 * 15 14 13 19 19 O 1.42899 * 109.48189 * 65.05648 * 11 10 9 20 20 H 0.97001 * 119.99888 * 359.97438 * 1 2 3 21 21 H 0.96999 * 119.99925 * 359.97438 * 9 7 2 22 22 H 1.09004 * 109.46834 * 59.99147 * 10 9 7 23 23 H 1.09003 * 109.46586 * 299.99986 * 10 9 7 24 24 H 1.09002 * 109.52244 * 302.31317 * 13 11 10 25 25 H 1.09004 * 109.52508 * 62.43846 * 13 11 10 26 26 H 1.09001 * 109.54414 * 176.87772 * 14 13 11 27 27 H 1.09002 * 109.54680 * 297.14715 * 14 13 11 28 28 H 1.09002 * 109.47233 * 297.62202 * 18 15 14 29 29 H 1.08999 * 109.48998 * 177.59482 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 -0.0011 11 6 5.6165 -2.1910 -0.0009 12 1 5.8660 -1.5441 -0.8419 13 6 6.3812 -3.5112 -0.1278 14 6 7.8857 -3.2300 -0.0673 15 6 8.2033 -2.4962 1.2408 16 9 9.5633 -2.1703 1.2754 17 9 7.8924 -3.3205 2.3276 18 6 7.3681 -1.2152 1.3149 19 8 5.9812 -1.5464 1.2212 20 1 -0.4850 0.8401 0.0004 21 1 3.8646 -0.3619 0.0004 22 1 3.8492 -3.0413 -0.8918 23 1 3.8486 -3.0432 0.8882 24 1 6.1013 -4.1744 0.6907 25 1 6.1370 -3.9837 -1.0793 26 1 8.4343 -4.1714 -0.1014 27 1 8.1747 -2.6072 -0.9139 28 1 7.6409 -0.5555 0.4912 29 1 7.5584 -0.7114 2.2625 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885555354.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:17 Heat of formation + Delta-G solvation = -161.353630 kcal Electronic energy + Delta-G solvation = -15593.959859 eV Core-core repulsion = 12573.098739 eV Total energy + Delta-G solvation = -3020.861119 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.02259 -48.04596 -40.27888 -36.64835 -34.53037 -33.69832 -31.62860 -28.21445 -25.90147 -24.33990 -22.91315 -21.66001 -19.78790 -18.58982 -18.40576 -17.59910 -17.02278 -16.65750 -16.34101 -15.57936 -15.10709 -14.86897 -14.73855 -14.47125 -14.28534 -14.09860 -13.77886 -13.54762 -13.35652 -13.01704 -12.79870 -12.28155 -12.13885 -11.94760 -11.77384 -11.46267 -11.00780 -10.58858 -9.30496 -8.02609 -5.36067 1.38555 1.42673 1.50498 2.48960 2.50351 2.63067 2.99720 3.28052 3.30678 3.36513 3.57371 3.92646 4.04438 4.14661 4.29222 4.38460 4.51656 4.57115 4.76904 4.82335 4.94388 4.98284 5.20587 5.74560 6.07326 6.21347 7.07925 7.83506 8.03141 9.18875 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.050725 B = 0.007141 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.864776 B = 3920.118906 C = 4201.690909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.255 1.255 7 C -0.238 4.238 8 H 0.058 0.942 9 N -0.756 5.756 10 C 0.159 3.841 11 C 0.075 3.925 12 H 0.082 0.918 13 C -0.140 4.140 14 C -0.153 4.153 15 C 0.249 3.751 16 F -0.201 7.201 17 F -0.209 7.209 18 C 0.021 3.979 19 O -0.379 6.379 20 H 0.258 0.742 21 H 0.368 0.632 22 H 0.059 0.941 23 H 0.022 0.978 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.891 -4.726 -1.427 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.179 1.179 7 C -0.368 4.368 8 H 0.076 0.924 9 N -0.402 5.402 10 C 0.033 3.967 11 C 0.017 3.983 12 H 0.100 0.900 13 C -0.178 4.178 14 C -0.191 4.191 15 C 0.213 3.787 16 F -0.182 7.182 17 F -0.190 7.190 18 C -0.057 4.057 19 O -0.298 6.298 20 H 0.067 0.933 21 H 0.201 0.799 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.091 0.909 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 20.584 -4.819 -1.253 21.178 hybrid contribution 0.156 0.849 0.279 0.907 sum 20.740 -3.970 -0.974 21.139 Atomic orbital electron populations 1.69889 1.07157 1.26753 1.59680 1.25517 0.96130 1.01355 1.02495 0.85389 0.78593 0.79434 0.78310 1.19805 1.22295 1.17925 1.19068 0.82700 0.93623 1.41448 0.92423 1.42629 1.02475 1.04144 1.90920 1.20859 0.88387 0.88031 0.99389 1.22631 0.94394 0.94455 0.86790 0.89973 1.22129 0.92901 0.97105 1.05647 1.22665 0.98028 1.03673 0.94721 1.22166 0.77527 0.92111 0.86943 1.92993 1.34741 1.93428 1.97072 1.92994 1.92826 1.74648 1.58507 1.23651 0.81686 0.93597 1.06759 1.88169 1.22937 1.78945 1.39763 0.93291 0.79922 0.92340 0.96009 0.90907 0.86518 0.87332 0.86195 0.87674 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.84 13.97 21.65 0.30 -63.54 15 2 C -0.06 -3.80 5.50 84.86 0.47 -3.34 15 3 Si 0.96 45.99 27.74 68.60 1.90 47.89 15 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 15 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 15 6 H -0.25 -11.29 6.52 99.48 0.65 -10.64 15 7 C -0.24 -13.81 10.47 84.03 0.88 -12.93 15 8 H 0.06 3.64 8.06 -2.91 -0.02 3.62 15 9 N -0.76 -35.91 5.35 -343.46 -1.84 -37.75 15 10 C 0.16 5.93 5.93 86.38 0.51 6.44 15 11 C 0.07 2.06 2.68 30.62 0.08 2.14 15 12 H 0.08 2.01 8.14 -2.39 -0.02 1.99 15 13 C -0.14 -2.78 5.28 30.69 0.16 -2.62 15 14 C -0.15 -2.48 5.56 30.76 0.17 -2.31 15 15 C 0.25 5.38 2.16 30.73 0.07 5.44 15 16 F -0.20 -4.36 17.07 44.97 0.77 -3.59 15 17 F -0.21 -5.66 16.68 44.97 0.75 -4.91 15 18 C 0.02 0.47 6.33 72.02 0.46 0.93 15 19 O -0.38 -11.81 10.32 -148.98 -1.54 -13.35 15 20 H 0.26 15.91 8.31 -92.71 -0.77 15.14 15 21 H 0.37 16.77 5.53 -92.71 -0.51 16.26 15 22 H 0.06 2.03 8.14 -2.38 -0.02 2.01 15 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 15 24 H 0.07 1.65 7.94 -2.39 -0.02 1.63 15 25 H 0.12 1.77 8.14 -2.38 -0.02 1.75 15 26 H 0.11 1.45 8.14 -2.39 -0.02 1.43 15 27 H 0.12 1.40 8.14 -2.39 -0.02 1.38 15 28 H 0.11 1.83 8.14 -2.39 -0.02 1.81 15 29 H 0.12 2.51 8.14 -2.39 -0.02 2.49 15 Total: -1.00 -71.00 250.75 3.72 -67.27 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.58 Total: 14.21 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 2.80 Total: -6.24 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -1.54 Total: -101.29 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.54 Total: -13.35 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 1.52 Total: -8.50 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -71.00 3.72 -67.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885555354.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.079 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds