Wall clock time and date at job start Mon Mar 30 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00089 * 2 1 4 4 H 1.48498 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46966 * 300.00271 * 3 2 1 6 6 H 1.48496 * 109.46812 * 59.99857 * 3 2 1 7 7 C 1.38946 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00294 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00495 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99757 * 5.21590 * 10 9 7 12 12 C 1.50704 * 119.99943 * 185.22352 * 10 9 7 13 13 N 1.46497 * 115.54770 * 306.04785 * 12 10 9 14 14 C 1.34944 * 126.03901 * 292.92549 * 13 12 10 15 15 C 1.35317 * 107.74618 * 179.77387 * 14 13 12 16 16 C 1.39868 * 107.91775 * 0.22898 * 15 14 13 17 17 N 1.30837 * 108.20587 * 0.02562 * 16 15 14 18 18 C 1.52999 * 117.51655 * 91.75309 * 12 10 9 19 19 C 1.52998 * 117.49563 * 160.38334 * 12 10 9 20 20 H 0.96996 * 120.00083 * 0.02562 * 1 2 3 21 21 H 0.97008 * 119.99887 * 359.97438 * 9 7 2 22 22 H 1.08003 * 126.12835 * 0.04005 * 14 13 12 23 23 H 1.07997 * 126.03914 * 180.24859 * 15 14 13 24 24 H 1.08006 * 125.89820 * 179.97438 * 16 15 14 25 25 H 1.09005 * 117.49628 * 214.96352 * 18 12 10 26 26 H 1.08995 * 117.50410 * 359.97438 * 18 12 10 27 27 H 1.09004 * 117.49948 * 359.96976 * 19 12 10 28 28 H 1.08996 * 117.50157 * 144.99530 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2065 -3.5600 0.0948 12 6 1.2486 -4.8602 -0.1216 13 7 0.1775 -5.0655 0.8565 14 6 0.3376 -5.2325 2.1859 15 6 -0.8904 -5.3859 2.7332 16 6 -1.8329 -5.3153 1.7022 17 7 -1.1937 -5.1269 0.5763 18 6 1.0412 -5.4295 -1.5265 19 6 2.0387 -6.0902 -0.5728 20 1 -0.4850 0.8400 -0.0004 21 1 0.3534 -2.3906 -0.0016 22 1 1.2772 -5.2380 2.7184 23 1 -1.1048 -5.5360 3.7810 24 1 -2.9035 -5.4022 1.8158 25 1 0.1078 -5.9570 -1.7230 26 1 1.4460 -4.8619 -2.3644 27 1 3.0999 -5.9574 -0.7833 28 1 1.7615 -7.0523 -0.1420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931297797.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:25 Heat of formation + Delta-G solvation = 49.617020 kcal Electronic energy + Delta-G solvation = -14748.733330 eV Core-core repulsion = 12187.709771 eV Total energy + Delta-G solvation = -2561.023559 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.19749 -40.42563 -37.58547 -36.07985 -33.43014 -32.06633 -30.77069 -27.71849 -25.00291 -23.67361 -22.69548 -21.62981 -20.59438 -19.98339 -18.89794 -17.16143 -16.97132 -16.02039 -15.93361 -15.53244 -15.09659 -14.99454 -14.58759 -14.00405 -13.64847 -13.60464 -13.01477 -12.62944 -12.55688 -12.19769 -12.11919 -11.85920 -11.65124 -11.50326 -10.85077 -10.27525 -10.19380 -9.49789 -8.59279 -6.11742 0.93343 1.09617 1.37480 1.40451 1.53448 1.90286 1.99677 2.18414 2.46950 2.85599 3.12051 3.48205 3.70194 3.95201 4.02144 4.21572 4.41807 4.51778 4.73771 4.76909 4.86781 5.03513 5.16025 5.28049 5.80113 5.80675 6.06758 6.37148 6.80514 6.92856 7.32271 7.82884 8.57423 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030648 B = 0.009199 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.368672 B = 3042.970275 C = 3532.989403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.010 4.010 3 Si 1.004 2.996 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.344 4.344 8 H 0.089 0.911 9 N -0.548 5.548 10 C 0.462 3.538 11 O -0.617 6.617 12 C 0.060 3.940 13 N -0.344 5.344 14 C 0.045 3.955 15 C -0.273 4.273 16 C 0.041 3.959 17 N -0.327 5.327 18 C -0.128 4.128 19 C -0.115 4.115 20 H 0.282 0.718 21 H 0.393 0.607 22 H 0.177 0.823 23 H 0.176 0.824 24 H 0.216 0.784 25 H 0.124 0.876 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 -9.520 2.104 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.211 4.211 3 Si 0.826 3.174 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.473 4.473 8 H 0.107 0.893 9 N -0.180 5.180 10 C 0.247 3.753 11 O -0.504 6.504 12 C -0.029 4.029 13 N -0.126 5.126 14 C -0.101 4.101 15 C -0.302 4.302 16 C -0.145 4.145 17 N -0.147 5.147 18 C -0.166 4.166 19 C -0.154 4.154 20 H 0.091 0.909 21 H 0.226 0.774 22 H 0.194 0.806 23 H 0.193 0.807 24 H 0.232 0.768 25 H 0.142 0.858 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.117 -9.154 0.800 9.429 hybrid contribution -0.134 0.891 0.991 1.339 sum -2.250 -8.263 1.791 8.749 Atomic orbital electron populations 1.69730 1.07356 1.29840 1.48420 1.26291 0.96540 1.03084 0.95218 0.84729 0.78126 0.76029 0.78564 1.19111 1.19190 1.19397 1.19893 0.93055 0.83488 1.50863 0.89274 1.41950 1.09324 1.04858 1.61893 1.19322 0.87104 0.84216 0.84662 1.90506 1.14883 1.87124 1.57889 1.20788 0.92085 0.95133 0.94884 1.47891 1.03945 1.55429 1.05319 1.22974 1.01813 1.00815 0.84466 1.21817 0.90435 1.16050 1.01876 1.24516 1.01855 0.98522 0.89646 1.77320 0.86757 1.25089 1.25580 1.23328 1.02247 1.01140 0.89848 1.23457 0.98869 0.93811 0.99255 0.90870 0.77416 0.80567 0.80654 0.76757 0.85754 0.87194 0.86458 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.00 13.05 21.66 0.28 -50.72 15 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 15 3 Si 1.00 42.74 29.55 68.60 2.03 44.76 15 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 7 C -0.34 -19.93 9.68 84.04 0.81 -19.11 15 8 H 0.09 5.37 7.17 -2.91 -0.02 5.35 15 9 N -0.55 -30.02 5.28 -306.98 -1.62 -31.64 15 10 C 0.46 23.17 7.30 87.66 0.64 23.81 15 11 O -0.62 -34.27 16.03 -3.07 -0.05 -34.32 15 12 C 0.06 2.34 2.68 2.86 0.01 2.35 15 13 N -0.34 -12.86 3.76 -311.25 -1.17 -14.03 15 14 C 0.04 1.50 11.45 83.54 0.96 2.45 15 15 C -0.27 -7.72 10.80 21.99 0.24 -7.48 15 16 C 0.04 1.19 12.02 85.24 1.02 2.22 15 17 N -0.33 -11.91 12.42 -57.02 -0.71 -12.62 15 18 C -0.13 -4.08 10.00 30.60 0.31 -3.78 15 19 C -0.12 -3.49 9.97 30.60 0.30 -3.18 15 20 H 0.28 14.52 8.31 -92.71 -0.77 13.75 15 21 H 0.39 21.90 7.90 -92.70 -0.73 21.17 15 22 H 0.18 5.34 8.06 -2.91 -0.02 5.31 15 23 H 0.18 3.71 8.06 -2.91 -0.02 3.68 15 24 H 0.22 4.43 8.06 -2.91 -0.02 4.41 15 25 H 0.12 3.61 8.14 -2.38 -0.02 3.59 15 26 H 0.11 3.50 8.14 -2.39 -0.02 3.48 15 27 H 0.12 3.62 7.81 -2.38 -0.02 3.61 15 28 H 0.13 3.17 8.14 -2.39 -0.02 3.15 15 Total: -1.00 -68.79 260.61 3.97 -64.82 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: 0.45 Total: 36.56 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.76 Total: -2.81 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -3.22 Total: -109.01 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.05 Total: -34.32 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.79 3.97 -64.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297797.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.437 kcal (2) G-P(sol) polarization free energy of solvation -68.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds