Wall clock time and date at job start Mon Mar 30 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99668 * 2 1 4 4 H 1.48493 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46909 * 299.99948 * 3 2 1 6 6 H 1.48504 * 109.47256 * 59.99597 * 3 2 1 7 7 C 1.37869 * 120.00558 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00511 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00045 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47408 * 299.99910 * 9 7 2 11 11 O 1.42896 * 109.47055 * 59.99844 * 9 7 2 12 12 C 1.52999 * 109.47285 * 179.97438 * 9 7 2 13 13 N 1.46904 * 109.47066 * 181.62969 * 12 9 7 14 14 C 1.47958 * 111.00053 * 184.24723 * 13 12 9 15 15 C 1.53932 * 86.17982 * 137.58394 * 14 13 12 16 16 C 1.47964 * 111.00055 * 283.60867 * 13 12 9 17 17 H 1.09004 * 113.75901 * 336.73404 * 16 13 12 18 18 C 1.53003 * 113.75711 * 108.10016 * 16 13 12 19 19 F 1.39905 * 109.46687 * 176.06599 * 18 16 13 20 20 F 1.39897 * 109.47069 * 296.06191 * 18 16 13 21 21 H 0.97001 * 120.00629 * 0.02562 * 1 2 3 22 22 H 0.96705 * 114.00244 * 60.00053 * 11 9 7 23 23 H 1.08999 * 109.46841 * 61.63779 * 12 9 7 24 24 H 1.08992 * 109.47300 * 301.63214 * 12 9 7 25 25 H 1.09007 * 113.76024 * 23.26650 * 14 13 12 26 26 H 1.08999 * 113.75980 * 251.90456 * 14 13 12 27 27 H 1.09003 * 113.73556 * 90.64108 * 15 14 13 28 28 H 1.09004 * 113.73817 * 221.92286 * 15 14 13 29 29 H 1.08997 * 109.47039 * 56.06713 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6242 -2.5568 0.8903 11 8 0.4301 -2.5751 -1.1665 12 6 2.2455 -3.6619 0.0005 13 7 1.5115 -4.9339 -0.0389 14 6 2.4372 -6.0836 0.0622 15 6 1.4051 -6.6980 1.0249 16 6 0.9361 -5.2553 1.2859 17 1 1.4487 -4.7703 2.1167 18 6 -0.5850 -5.1037 1.3504 19 9 -1.0415 -5.5136 2.6077 20 9 -0.9293 -3.7636 1.1434 21 1 -0.4851 0.8400 -0.0004 22 1 0.9225 -2.5299 -1.9976 23 1 2.8527 -3.6208 0.9048 24 1 2.8913 -3.5879 -0.8744 25 1 3.3889 -5.8410 0.5352 26 1 2.5530 -6.6375 -0.8694 27 1 0.6587 -7.3192 0.5298 28 1 1.8497 -7.1791 1.8962 29 1 -1.0447 -5.7204 0.5781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931425042.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:20 Heat of formation + Delta-G solvation = -144.168111 kcal Electronic energy + Delta-G solvation = -15982.969560 eV Core-core repulsion = 12962.853661 eV Total energy + Delta-G solvation = -3020.115899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.77976 -47.80518 -40.86662 -37.38194 -34.19609 -32.10480 -29.73286 -28.52393 -25.52084 -24.34723 -22.36962 -20.93903 -19.09949 -18.21132 -17.99959 -17.64781 -16.67175 -16.64645 -16.24858 -15.66423 -15.14875 -14.70215 -14.56738 -14.29097 -14.10813 -13.69245 -13.34485 -12.96532 -12.84054 -12.68481 -12.48229 -12.24772 -11.99722 -11.72216 -11.51527 -10.89077 -10.62531 -10.05480 -9.70481 -8.09891 -6.37015 1.38384 1.39018 1.51284 2.37914 2.64358 3.09614 3.15766 3.37175 3.40124 3.82447 4.05130 4.15128 4.23105 4.41810 4.44980 4.54557 4.65653 4.77283 4.89880 5.05479 5.19334 5.33769 5.63676 5.92063 5.98587 6.15745 6.77051 7.37093 7.68510 8.93746 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.037996 B = 0.009256 C = 0.008146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.741910 B = 3024.344116 C = 3436.629239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.593 4.593 8 H 0.056 0.944 9 C 0.227 3.773 10 H 0.040 0.960 11 O -0.564 6.564 12 C 0.010 3.990 13 N -0.473 5.473 14 C 0.002 3.998 15 C -0.110 4.110 16 C -0.032 4.032 17 H 0.082 0.918 18 C 0.271 3.729 19 F -0.214 7.214 20 F -0.212 7.212 21 H 0.259 0.741 22 H 0.346 0.654 23 H 0.035 0.965 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 -13.420 1.450 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.631 4.631 8 H 0.074 0.926 9 C 0.169 3.831 10 H 0.057 0.943 11 O -0.366 6.366 12 C -0.119 4.119 13 N -0.196 5.196 14 C -0.126 4.126 15 C -0.147 4.147 16 C -0.143 4.143 17 H 0.100 0.900 18 C 0.217 3.783 19 F -0.196 7.196 20 F -0.193 7.193 21 H 0.068 0.932 22 H 0.189 0.811 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.917 -13.261 1.360 13.646 hybrid contribution 1.185 1.568 0.495 2.026 sum 4.102 -11.693 1.854 12.530 Atomic orbital electron populations 1.70268 1.07646 1.27028 1.48336 1.25906 0.95452 1.02877 0.93536 0.85528 0.79126 0.79316 0.77666 1.18688 1.20408 1.20651 1.22153 0.93377 0.93266 1.54302 0.92603 1.19379 0.88079 0.89549 0.86068 0.94257 1.86562 1.38291 1.96386 1.15349 1.23241 0.96783 0.91740 1.00100 1.68399 1.23438 1.02313 1.25425 1.23968 0.95255 0.92059 1.01346 1.23323 0.98738 0.92292 1.00356 1.24530 0.93709 1.01197 0.94826 0.90049 1.22116 0.94724 0.79009 0.82460 1.92922 1.90530 1.90272 1.45835 1.93057 1.93497 1.37845 1.94911 0.93193 0.81089 0.94683 0.90985 0.90608 0.87330 0.86934 0.88020 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.70 12.84 21.44 0.28 -55.43 15 2 C 0.02 1.43 5.40 84.65 0.46 1.89 15 3 Si 0.96 44.52 29.54 68.60 2.03 46.54 15 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 7 C -0.59 -33.55 8.76 25.60 0.22 -33.32 15 8 H 0.06 3.04 7.74 -2.91 -0.02 3.01 15 9 C 0.23 11.93 2.30 29.85 0.07 12.00 15 10 H 0.04 2.34 5.39 -2.39 -0.01 2.33 15 11 O -0.56 -30.52 12.44 -148.98 -1.85 -32.38 15 12 C 0.01 0.41 4.35 86.30 0.38 0.78 15 13 N -0.47 -15.94 5.86 -883.83 -5.18 -21.12 15 14 C 0.00 0.04 7.98 86.40 0.69 0.73 15 15 C -0.11 -2.21 7.85 31.24 0.25 -1.97 15 16 C -0.03 -0.98 3.01 45.02 0.14 -0.84 15 17 H 0.08 2.72 7.69 -2.39 -0.02 2.70 15 18 C 0.27 9.20 5.29 71.98 0.38 9.58 15 19 F -0.21 -7.02 17.34 44.97 0.78 -6.24 15 20 F -0.21 -9.98 14.13 44.97 0.64 -9.35 15 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 15 22 H 0.35 16.85 9.04 -74.05 -0.67 16.18 15 23 H 0.03 1.40 7.68 -2.39 -0.02 1.38 15 24 H 0.07 2.84 8.14 -2.39 -0.02 2.82 15 25 H 0.08 1.65 7.88 -2.38 -0.02 1.63 15 26 H 0.11 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.11 1.88 8.01 -2.39 -0.02 1.87 15 28 H 0.10 1.59 8.14 -2.38 -0.02 1.57 15 29 H 0.13 3.75 8.02 -2.39 -0.02 3.73 15 Total: -1.00 -70.06 252.59 -0.25 -70.31 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.49 Total: 18.81 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 2.58 Total: -11.16 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -4.91 Total: -76.55 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.85 Total: -32.38 kcal Atomic # 9 Polarization: -17.00 SS G_CDS: 1.41 Total: -15.58 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -70.06 -0.25 -70.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931425042.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.860 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds