Wall clock time and date at job start Mon Mar 30 2020 03:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00015 * 2 1 4 4 H 1.48506 * 109.47010 * 269.99408 * 3 2 1 5 5 H 1.48496 * 109.47625 * 29.99809 * 3 2 1 6 6 H 1.48507 * 109.46880 * 149.99912 * 3 2 1 7 7 C 1.37878 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00243 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46678 * 299.99810 * 9 7 2 11 11 O 1.42899 * 109.46914 * 59.99955 * 9 7 2 12 12 C 1.52996 * 109.46820 * 180.02562 * 9 7 2 13 13 N 1.46903 * 109.46858 * 180.02562 * 12 9 7 14 14 C 1.48308 * 111.10591 * 269.24727 * 13 12 9 15 15 C 1.53927 * 86.18222 * 222.45445 * 14 13 12 16 16 C 1.47962 * 111.00056 * 169.99964 * 13 12 9 17 17 H 1.09002 * 113.76087 * 23.26139 * 16 13 12 18 18 C 1.52998 * 113.75829 * 252.00601 * 16 13 12 19 19 F 1.39895 * 109.47525 * 181.97748 * 18 16 13 20 20 F 1.39894 * 109.47524 * 301.98257 * 18 16 13 21 21 H 0.97005 * 119.99719 * 0.02562 * 1 2 3 22 22 H 0.96696 * 113.99935 * 60.00085 * 11 9 7 23 23 H 1.08997 * 109.47386 * 59.99834 * 12 9 7 24 24 H 1.09006 * 109.47546 * 299.99585 * 12 9 7 25 25 H 1.09003 * 113.75437 * 108.13284 * 14 13 12 26 26 H 1.08998 * 113.85723 * 336.78984 * 14 13 12 27 27 H 1.09000 * 113.73841 * 269.36062 * 15 14 13 28 28 H 1.09007 * 113.82901 * 138.09042 * 15 14 13 29 29 H 1.09004 * 109.46827 * 61.97980 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0018 13 7 1.5106 -4.9343 0.0012 14 6 1.2577 -5.4057 1.3845 15 6 1.6402 -6.8043 0.8679 16 6 2.4238 -6.0738 -0.2375 17 1 3.4617 -5.8669 0.0234 18 6 2.2712 -6.7064 -1.6221 19 9 3.1401 -7.7970 -1.7350 20 9 0.9526 -7.1410 -1.7936 21 1 -0.4850 0.8401 -0.0004 22 1 0.9223 -2.5300 -1.9975 23 1 2.8711 -3.6040 0.8922 24 1 2.8725 -3.6049 -0.8878 25 1 0.2159 -5.3213 1.6935 26 1 1.9536 -5.0041 2.1211 27 1 0.7934 -7.3818 0.4969 28 1 2.2720 -7.3694 1.5532 29 1 2.5130 -5.9686 -2.3873 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931425043.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:24 Heat of formation + Delta-G solvation = -122.139239 kcal Electronic energy + Delta-G solvation = -15514.866673 eV Core-core repulsion = 12495.706017 eV Total energy + Delta-G solvation = -3019.160656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.74041 -46.73118 -39.52195 -35.52402 -32.11321 -30.52440 -28.59621 -26.93415 -23.81979 -23.30286 -20.55311 -19.57808 -17.29087 -17.24817 -16.90516 -16.52136 -15.17867 -14.72781 -14.62251 -14.06863 -13.70734 -13.48518 -13.23230 -13.08463 -12.62322 -12.24483 -11.90345 -11.63436 -11.26754 -10.99898 -10.96280 -10.67726 -10.52146 -10.22567 -10.03853 -9.12900 -8.60830 -8.46530 -7.99586 -6.02793 -4.22382 3.25274 3.32504 3.34301 3.67705 4.21952 4.34354 4.43925 4.52423 4.85222 5.13632 5.24625 5.26472 5.41199 5.57090 5.72382 5.79474 5.99739 6.06023 6.26328 6.45316 6.62072 6.78751 7.36806 7.70755 7.82817 8.15324 8.81376 9.43183 9.59329 11.01200 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.050173 B = 0.006720 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.937950 B = 4165.787128 C = 4204.635327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.577 4.577 8 H 0.054 0.946 9 C 0.243 3.757 10 H 0.054 0.946 11 O -0.553 6.553 12 C -0.007 4.007 13 N -0.449 5.449 14 C 0.009 3.991 15 C -0.138 4.138 16 C -0.035 4.035 17 H 0.099 0.901 18 C 0.283 3.717 19 F -0.211 7.211 20 F -0.195 7.195 21 H 0.261 0.739 22 H 0.341 0.659 23 H 0.041 0.959 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.360 -11.434 0.004 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.616 4.616 8 H 0.072 0.928 9 C 0.185 3.815 10 H 0.072 0.928 11 O -0.354 6.354 12 C -0.136 4.136 13 N -0.171 5.171 14 C -0.120 4.120 15 C -0.175 4.175 16 C -0.146 4.146 17 H 0.117 0.883 18 C 0.229 3.771 19 F -0.192 7.192 20 F -0.176 7.176 21 H 0.071 0.929 22 H 0.184 0.816 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.146 -11.256 0.023 11.995 hybrid contribution 1.795 0.989 0.138 2.054 sum 5.942 -10.267 0.161 11.863 Atomic orbital electron populations 1.70091 1.05933 1.26468 1.46729 1.25026 0.94681 0.99095 0.93792 0.86670 0.79906 0.83522 0.78237 1.20488 1.21076 1.19894 1.21645 0.93070 0.91615 1.55241 0.92772 1.19191 0.87668 0.88114 0.86575 0.92834 1.86594 1.37666 1.96258 1.14889 1.23707 0.97955 0.91734 1.00155 1.68673 1.30215 1.00033 1.18208 1.23875 1.03021 0.93604 0.91463 1.23356 1.00314 0.97305 0.96563 1.24541 0.99119 0.96830 0.94065 0.88298 1.21386 0.72387 0.83911 0.99456 1.92943 1.70063 1.58957 1.97265 1.92960 1.37114 1.91013 1.96501 0.92927 0.81633 0.94058 0.91926 0.88989 0.91095 0.88414 0.90907 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.35 12.84 55.43 0.71 -24.64 15 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 15 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.58 -15.63 8.76 -34.44 -0.30 -15.93 15 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 15 9 C 0.24 6.10 3.08 -27.88 -0.09 6.01 15 10 H 0.05 1.50 8.14 -51.93 -0.42 1.08 15 11 O -0.55 -14.45 12.60 -35.23 -0.44 -14.90 15 12 C -0.01 -0.14 4.40 -3.82 -0.02 -0.16 15 13 N -0.45 -7.91 5.82 -229.61 -1.34 -9.25 15 14 C 0.01 0.14 7.97 -2.58 -0.02 0.12 15 15 C -0.14 -1.80 7.73 -25.79 -0.20 -2.00 15 16 C -0.03 -0.49 3.55 -66.66 -0.24 -0.73 15 17 H 0.10 1.27 7.92 -51.93 -0.41 0.86 15 18 C 0.28 3.89 5.51 37.16 0.20 4.10 15 19 F -0.21 -2.87 17.34 2.25 0.04 -2.83 15 20 F -0.19 -3.09 16.14 2.25 0.04 -3.05 15 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 22 H 0.34 7.93 9.04 45.56 0.41 8.35 15 23 H 0.04 0.79 7.39 -51.93 -0.38 0.40 15 24 H 0.06 1.18 8.08 -51.93 -0.42 0.76 15 25 H 0.09 1.43 8.14 -51.93 -0.42 1.01 15 26 H 0.07 1.02 7.50 -51.93 -0.39 0.63 15 27 H 0.10 1.32 7.18 -51.93 -0.37 0.95 15 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 29 H 0.11 1.35 8.14 -51.93 -0.42 0.92 15 LS Contribution 257.73 15.07 3.88 3.88 Total: -1.00 -30.62 257.73 -5.68 -36.31 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -2.80 Total: 5.01 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.75 Total: -6.45 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: -0.63 Total: -33.89 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.44 Total: -14.90 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.08 Total: -5.88 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.62 -5.68 -36.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931425043.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.834 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds