Wall clock time and date at job start Mon Mar 30 2020 03:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00015 * 2 1 4 4 H 1.48506 * 109.47010 * 269.99408 * 3 2 1 5 5 H 1.48496 * 109.47625 * 29.99809 * 3 2 1 6 6 H 1.48507 * 109.46880 * 149.99912 * 3 2 1 7 7 C 1.37878 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00243 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46678 * 299.99810 * 9 7 2 11 11 O 1.42899 * 109.46914 * 59.99955 * 9 7 2 12 12 C 1.52996 * 109.46820 * 180.02562 * 9 7 2 13 13 N 1.46903 * 109.46858 * 180.02562 * 12 9 7 14 14 C 1.48308 * 111.10591 * 269.24727 * 13 12 9 15 15 C 1.53927 * 86.18222 * 222.45445 * 14 13 12 16 16 C 1.47962 * 111.00056 * 169.99964 * 13 12 9 17 17 H 1.09002 * 113.76087 * 23.26139 * 16 13 12 18 18 C 1.52998 * 113.75829 * 252.00601 * 16 13 12 19 19 F 1.39895 * 109.47525 * 181.97748 * 18 16 13 20 20 F 1.39894 * 109.47524 * 301.98257 * 18 16 13 21 21 H 0.97005 * 119.99719 * 0.02562 * 1 2 3 22 22 H 0.96696 * 113.99935 * 60.00085 * 11 9 7 23 23 H 1.08997 * 109.47386 * 59.99834 * 12 9 7 24 24 H 1.09006 * 109.47546 * 299.99585 * 12 9 7 25 25 H 1.09003 * 113.75437 * 108.13284 * 14 13 12 26 26 H 1.08998 * 113.85723 * 336.78984 * 14 13 12 27 27 H 1.09000 * 113.73841 * 269.36062 * 15 14 13 28 28 H 1.09007 * 113.82901 * 138.09042 * 15 14 13 29 29 H 1.09004 * 109.46827 * 61.97980 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0018 13 7 1.5106 -4.9343 0.0012 14 6 1.2577 -5.4057 1.3845 15 6 1.6402 -6.8043 0.8679 16 6 2.4238 -6.0738 -0.2375 17 1 3.4617 -5.8669 0.0234 18 6 2.2712 -6.7064 -1.6221 19 9 3.1401 -7.7970 -1.7350 20 9 0.9526 -7.1410 -1.7936 21 1 -0.4850 0.8401 -0.0004 22 1 0.9223 -2.5300 -1.9975 23 1 2.8711 -3.6040 0.8922 24 1 2.8725 -3.6049 -0.8878 25 1 0.2159 -5.3213 1.6935 26 1 1.9536 -5.0041 2.1211 27 1 0.7934 -7.3818 0.4969 28 1 2.2720 -7.3694 1.5532 29 1 2.5130 -5.9686 -2.3873 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931425043.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:23 Heat of formation + Delta-G solvation = -146.036286 kcal Electronic energy + Delta-G solvation = -15515.902927 eV Core-core repulsion = 12495.706017 eV Total energy + Delta-G solvation = -3020.196909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.85203 -47.85616 -40.79199 -37.46948 -34.23081 -32.10702 -29.73649 -28.74073 -25.57755 -24.44016 -22.34204 -20.73026 -19.11900 -18.36322 -18.15690 -17.72966 -16.68001 -16.64551 -16.30585 -15.74474 -14.98876 -14.88217 -14.68742 -14.28599 -14.22620 -13.49856 -13.30873 -13.06724 -12.94460 -12.81414 -12.64573 -12.25377 -11.96850 -11.77785 -11.42870 -11.03394 -10.71467 -10.16265 -9.63628 -8.13150 -6.40129 1.41262 1.41478 1.52302 2.36429 2.53800 3.12003 3.14298 3.29718 3.42955 3.76424 3.99149 4.12707 4.19166 4.28160 4.41043 4.50010 4.62158 4.76140 4.86655 5.01547 5.13187 5.30407 5.62556 5.79800 5.97589 6.13790 6.73761 7.34945 7.62318 8.91348 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.050173 B = 0.006720 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.937950 B = 4165.787128 C = 4204.635327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.588 4.588 8 H 0.063 0.937 9 C 0.240 3.760 10 H 0.013 0.987 11 O -0.572 6.572 12 C 0.012 3.988 13 N -0.478 5.478 14 C 0.002 3.998 15 C -0.123 4.123 16 C -0.029 4.029 17 H 0.120 0.880 18 C 0.282 3.718 19 F -0.208 7.208 20 F -0.209 7.209 21 H 0.261 0.739 22 H 0.352 0.648 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.199 -11.871 -0.034 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.626 4.626 8 H 0.081 0.919 9 C 0.182 3.818 10 H 0.031 0.969 11 O -0.375 6.375 12 C -0.117 4.117 13 N -0.200 5.200 14 C -0.126 4.126 15 C -0.161 4.161 16 C -0.140 4.140 17 H 0.138 0.862 18 C 0.228 3.772 19 F -0.189 7.189 20 F -0.191 7.191 21 H 0.070 0.930 22 H 0.196 0.804 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.005 -11.711 -0.018 13.161 hybrid contribution 1.198 1.065 0.153 1.610 sum 7.203 -10.646 0.135 12.855 Atomic orbital electron populations 1.70242 1.07817 1.27348 1.48438 1.25925 0.95426 1.03027 0.93375 0.85538 0.78714 0.78732 0.78443 1.19817 1.21122 1.18691 1.22072 0.93610 0.92678 1.54254 0.91931 1.19061 0.87747 0.90134 0.84844 0.96893 1.86532 1.38777 1.96457 1.15737 1.23295 0.96390 0.91040 1.00945 1.68570 1.31465 1.00067 1.19931 1.23954 1.02686 0.95213 0.90748 1.23274 1.00319 0.96136 0.96345 1.24630 0.99687 0.95030 0.94627 0.86250 1.21520 0.71707 0.84148 0.99851 1.92949 1.69820 1.58884 1.97256 1.92935 1.38336 1.91209 1.96584 0.93040 0.80420 0.93379 0.90861 0.90289 0.90094 0.89005 0.87910 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.24 12.84 21.45 0.28 -53.97 15 2 C 0.02 1.38 5.40 84.65 0.46 1.84 15 3 Si 0.96 42.75 29.54 68.60 2.03 44.77 15 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 5 H -0.29 -12.61 7.11 99.48 0.71 -11.91 15 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.59 -31.66 8.76 25.60 0.22 -31.44 15 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 15 9 C 0.24 12.18 3.08 29.85 0.09 12.28 15 10 H 0.01 0.76 8.14 -2.39 -0.02 0.74 15 11 O -0.57 -30.33 12.60 -148.98 -1.88 -32.21 15 12 C 0.01 0.45 4.40 86.30 0.38 0.83 15 13 N -0.48 -16.27 5.82 -880.36 -5.13 -21.40 15 14 C 0.00 0.07 7.97 86.34 0.69 0.76 15 15 C -0.12 -2.92 7.73 31.23 0.24 -2.68 15 16 C -0.03 -0.75 3.55 45.02 0.16 -0.59 15 17 H 0.12 2.63 7.92 -2.39 -0.02 2.61 15 18 C 0.28 7.11 5.51 71.98 0.40 7.51 15 19 F -0.21 -5.10 17.34 44.97 0.78 -4.32 15 20 F -0.21 -6.36 16.14 44.97 0.73 -5.63 15 21 H 0.26 14.85 8.31 -92.70 -0.77 14.08 15 22 H 0.35 16.45 9.04 -74.06 -0.67 15.78 15 23 H 0.05 1.75 7.39 -2.39 -0.02 1.73 15 24 H 0.07 2.61 8.08 -2.38 -0.02 2.59 15 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.08 2.21 7.50 -2.39 -0.02 2.19 15 27 H 0.09 2.31 7.18 -2.39 -0.02 2.29 15 28 H 0.10 1.86 8.14 -2.38 -0.02 1.84 15 29 H 0.12 2.77 8.14 -2.38 -0.02 2.75 15 Total: -1.00 -65.32 257.73 -0.07 -65.38 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.49 Total: 18.87 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 2.64 Total: -11.50 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -4.85 Total: -75.37 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -1.88 Total: -32.21 kcal Atomic # 9 Polarization: -11.46 SS G_CDS: 1.51 Total: -9.95 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -65.32 -0.07 -65.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931425043.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.653 kcal (2) G-P(sol) polarization free energy of solvation -65.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds