Wall clock time and date at job start Mon Mar 30 2020 04:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47104 * 2 1 4 4 N 1.46503 * 109.47274 * 120.00427 * 2 1 3 5 5 C 1.34779 * 119.99488 * 275.00054 * 4 2 1 6 6 O 1.21683 * 120.00340 * 359.97438 * 5 4 2 7 7 C 1.46383 * 119.99539 * 179.97438 * 5 4 2 8 8 H 1.08003 * 119.99957 * 359.97438 * 7 5 4 9 9 C 1.40041 * 119.99969 * 179.97438 * 7 5 4 10 10 N 1.30675 * 119.99744 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 120.00093 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46965 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47378 * 120.00175 * 11 9 7 14 14 H 1.48501 * 109.47181 * 240.00272 * 11 9 7 15 15 C 1.50701 * 109.47303 * 240.00567 * 2 1 3 16 16 N 1.31789 * 119.12496 * 104.99690 * 15 2 1 17 17 C 1.32334 * 120.82070 * 180.02562 * 16 15 2 18 18 C 1.38603 * 119.10298 * 0.02562 * 17 16 15 19 19 C 1.38597 * 118.39883 * 0.02562 * 18 17 16 20 20 N 1.31792 * 119.11936 * 285.02296 * 15 2 1 21 21 H 1.09001 * 109.46886 * 59.99459 * 1 2 3 22 22 H 1.08993 * 109.47146 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47142 * 299.99789 * 1 2 3 24 24 H 0.96995 * 120.00009 * 94.99389 * 4 2 1 25 25 H 0.97006 * 119.99262 * 179.97438 * 10 9 7 26 26 H 1.08002 * 120.45044 * 179.72914 * 17 16 15 27 27 H 1.07995 * 120.80026 * 180.02562 * 18 17 16 28 28 H 1.07999 * 120.44737 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1624 2.4117 7 6 2.6345 -0.7086 3.5524 8 1 2.8906 -1.7567 3.5040 9 6 2.7687 -0.0099 4.7586 10 7 2.4584 1.2581 4.8172 11 14 3.3901 -0.8909 6.2841 12 1 3.6680 -2.3123 5.9561 13 1 4.6369 -0.2390 6.7590 14 1 2.3586 -0.8220 7.3502 15 6 2.0324 -0.7103 -1.2305 16 7 2.5271 0.0002 -2.2242 17 6 2.9771 -0.5888 -3.3205 18 6 2.9223 -1.9706 -3.4144 19 6 2.3943 -2.6832 -2.3494 20 7 1.9648 -2.0254 -1.2845 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.2490 -1.6318 1.1525 25 1 2.5511 1.7419 5.6529 26 1 3.3773 -0.0005 -4.1330 27 1 3.2822 -2.4796 -4.2962 28 1 2.3360 -3.7610 -2.3873 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953001261.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:04 Heat of formation + Delta-G solvation = -19.426745 kcal Electronic energy + Delta-G solvation = -14398.581639 eV Core-core repulsion = 11834.564118 eV Total energy + Delta-G solvation = -2564.017521 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.06206 -39.48757 -36.24737 -34.70286 -34.55900 -32.77653 -30.97646 -28.21612 -25.95192 -25.45474 -23.13886 -21.34918 -19.58995 -18.44712 -17.90398 -17.33422 -16.48279 -16.05150 -15.91815 -15.72598 -14.91298 -14.60697 -14.38371 -14.26493 -13.52836 -13.30904 -12.92823 -12.77004 -12.62864 -12.37322 -11.97958 -11.88302 -11.69905 -10.94540 -10.50830 -10.21406 -9.86570 -9.55369 -8.29252 -6.86239 -0.10594 0.20405 1.40541 1.41008 1.59173 2.24477 2.45944 2.67812 2.80403 3.01466 3.51398 3.61832 3.79106 4.02385 4.24027 4.31106 4.34482 4.49181 4.68342 4.83027 4.96303 5.17269 5.32120 5.46120 5.87287 6.08615 6.16648 6.25864 6.86374 7.12833 7.52209 8.47769 8.66880 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.047169 B = 0.006685 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.464951 B = 4187.525736 C = 4457.141570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.216 3.784 3 H 0.064 0.936 4 N -0.742 5.742 5 C 0.541 3.459 6 O -0.626 6.626 7 C -0.572 4.572 8 H 0.085 0.915 9 C 0.029 3.971 10 N -0.820 5.820 11 Si 1.001 2.999 12 H -0.248 1.248 13 H -0.268 1.268 14 H -0.266 1.266 15 C 0.306 3.694 16 N -0.545 5.545 17 C 0.133 3.867 18 C -0.210 4.210 19 C 0.135 3.865 20 N -0.532 5.532 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.043 0.957 24 H 0.395 0.605 25 H 0.275 0.725 26 H 0.203 0.797 27 H 0.196 0.804 28 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -10.093 -14.886 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.109 3.891 3 H 0.082 0.918 4 N -0.397 5.397 5 C 0.345 3.655 6 O -0.513 6.513 7 C -0.608 4.608 8 H 0.103 0.897 9 C -0.186 4.186 10 N -0.449 5.449 11 Si 0.820 3.180 12 H -0.171 1.171 13 H -0.193 1.193 14 H -0.191 1.191 15 C 0.037 3.963 16 N -0.260 5.260 17 C -0.032 4.032 18 C -0.232 4.232 19 C -0.029 4.029 20 N -0.246 5.246 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.230 0.770 25 H 0.085 0.915 26 H 0.220 0.780 27 H 0.213 0.787 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.971 -8.608 -13.976 16.443 hybrid contribution 0.527 -0.673 -0.081 0.858 sum 1.498 -9.280 -14.058 16.911 Atomic orbital electron populations 1.21952 0.93662 1.02315 1.01611 1.19068 0.94550 0.94770 0.80760 0.91765 1.45838 1.72167 1.13404 1.08322 1.18623 0.77649 0.86081 0.83114 1.90549 1.56952 1.18299 1.85536 1.21415 1.47295 0.98166 0.93952 0.89712 1.26986 0.92794 0.95186 1.03681 1.70199 1.36418 1.10511 1.27795 0.84932 0.78209 0.79254 0.75622 1.17126 1.19268 1.19127 1.22828 0.92005 0.87493 0.93936 1.68185 1.12017 1.43048 1.02742 1.23996 0.90838 0.94234 0.94117 1.23382 1.01270 0.95894 1.02609 1.24037 0.88975 1.02768 0.87163 1.68124 1.18439 1.09365 1.28708 0.90958 0.91472 0.93742 0.77043 0.91489 0.78015 0.78712 0.77762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 9.47 71.98 0.68 -4.74 15 2 C 0.22 9.61 2.97 44.24 0.13 9.74 15 3 H 0.06 3.28 7.55 -2.39 -0.02 3.26 15 4 N -0.74 -36.91 5.05 -450.38 -2.28 -39.18 15 5 C 0.54 32.98 7.71 86.36 0.67 33.65 15 6 O -0.63 -43.35 14.68 -4.29 -0.06 -43.41 15 7 C -0.57 -33.75 9.54 24.83 0.24 -33.51 15 8 H 0.08 4.54 7.85 -2.91 -0.02 4.52 15 9 C 0.03 1.64 5.50 85.30 0.47 2.11 15 10 N -0.82 -51.27 11.83 21.83 0.26 -51.01 15 11 Si 1.00 41.98 29.56 68.60 2.03 44.01 15 12 H -0.25 -9.67 7.11 99.48 0.71 -8.97 15 13 H -0.27 -10.77 7.11 99.48 0.71 -10.07 15 14 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 15 C 0.31 11.15 6.58 138.75 0.91 12.07 15 16 N -0.55 -17.91 10.32 -187.84 -1.94 -19.84 15 17 C 0.13 2.81 11.31 84.70 0.96 3.77 15 18 C -0.21 -3.26 10.17 22.44 0.23 -3.04 15 19 C 0.14 2.75 11.31 84.70 0.96 3.71 15 20 N -0.53 -16.65 9.60 -187.85 -1.80 -18.45 15 21 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 22 H 0.07 2.47 8.14 -2.39 -0.02 2.45 15 23 H 0.04 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.40 18.01 8.00 -92.71 -0.74 17.27 15 25 H 0.28 15.48 8.29 -92.70 -0.77 14.71 15 26 H 0.20 2.54 8.06 -2.91 -0.02 2.52 15 27 H 0.20 1.04 8.06 -2.91 -0.02 1.02 15 28 H 0.21 2.37 8.06 -2.91 -0.02 2.35 15 Total: -1.00 -82.48 257.21 1.89 -80.59 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.44 Total: 23.55 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 5.24 Total: 23.75 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -5.76 Total: -128.49 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -0.06 Total: -43.41 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -82.48 1.89 -80.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953001261.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.167 kcal (2) G-P(sol) polarization free energy of solvation -82.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds