Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35834 * 116.99955 * 2 1 4 4 C 1.38864 * 119.93396 * 179.97438 * 3 2 1 5 5 C 1.37875 * 120.06432 * 180.29201 * 4 3 2 6 6 C 1.39403 * 119.93518 * 359.47854 * 5 4 3 7 7 C 1.48321 * 120.06921 * 180.24841 * 6 5 4 8 8 C 1.40820 * 119.99446 * 0.27362 * 7 6 5 9 9 H 1.07998 * 120.00272 * 38.77658 * 8 7 6 10 10 C 1.40251 * 119.99822 * 218.77260 * 8 7 6 11 11 N 1.30622 * 119.99754 * 19.51287 * 10 8 7 12 12 Si 1.86803 * 120.00172 * 199.50944 * 10 8 7 13 13 H 1.48497 * 109.47050 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47018 * 120.00170 * 12 10 8 15 15 H 1.48498 * 109.47130 * 240.00173 * 12 10 8 16 16 N 1.31703 * 120.00389 * 180.26916 * 7 6 5 17 17 O 1.41596 * 119.99901 * 186.47390 * 16 7 6 18 18 C 1.39412 * 119.87012 * 0.51759 * 6 5 4 19 19 C 1.37871 * 119.93431 * 359.73487 * 18 6 5 20 20 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46788 * 300.00843 * 1 2 3 22 22 H 1.09005 * 109.46658 * 60.00053 * 1 2 3 23 23 H 1.08004 * 119.96753 * 0.02562 * 4 3 2 24 24 H 1.08005 * 120.03029 * 179.72823 * 5 4 3 25 25 H 0.97006 * 119.99759 * 179.97438 * 11 10 8 26 26 H 0.96699 * 114.00174 * 180.02562 * 17 16 7 27 27 H 1.08003 * 120.03507 * 179.70843 * 18 6 5 28 28 H 1.07995 * 119.96945 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 3.4325 1.2814 0.0005 5 6 4.0612 2.5084 0.0066 6 6 3.3034 3.6784 0.0012 7 6 3.9767 5.0000 0.0022 8 6 5.3829 5.0736 0.0027 9 1 5.9606 4.3741 -0.5832 10 6 6.0334 6.0556 0.7641 11 7 5.4046 6.6429 1.7468 12 14 7.7991 6.5234 0.3729 13 1 8.2811 5.7183 -0.7781 14 1 7.8642 7.9665 0.0289 15 1 8.6555 6.2576 1.5566 16 7 3.2594 6.1046 0.0025 17 8 3.8958 7.3620 -0.1349 18 6 1.9112 3.6039 0.0006 19 6 1.2881 2.3741 -0.0002 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 4.0192 0.3746 0.0005 24 1 5.1399 2.5631 0.0115 25 1 5.8546 7.3218 2.2737 26 1 3.2878 8.1139 -0.1230 27 1 1.3215 4.5087 0.0012 28 1 0.2097 2.3157 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078664697.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = -6.196385 kcal Electronic energy + Delta-G solvation = -14372.232547 eV Core-core repulsion = 11776.495986 eV Total energy + Delta-G solvation = -2595.736561 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.57692 -37.15853 -35.01106 -32.88211 -31.39599 -30.50022 -28.46590 -26.79375 -25.62337 -22.32676 -21.60675 -19.31909 -17.69807 -17.01791 -15.48640 -15.46265 -15.18811 -14.80732 -14.12949 -13.76837 -13.29601 -12.92227 -12.66289 -12.41638 -11.93171 -11.68970 -11.40552 -11.16259 -10.80631 -10.65100 -10.60112 -10.21101 -10.19330 -9.07963 -8.39511 -8.26829 -7.75301 -6.81612 -6.52022 -4.43740 1.88055 2.00980 3.12294 3.23549 3.27535 3.59080 3.92643 4.16507 4.69753 5.08588 5.15069 5.25897 5.35355 5.45114 5.49292 5.55012 5.99208 6.16028 6.18192 6.45989 6.65958 6.88331 7.17256 7.34713 7.36238 7.47955 7.86083 8.13925 8.59084 8.89876 9.12881 9.93012 10.49543 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.048080 B = 0.007328 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.228822 B = 3820.078132 C = 4254.989293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.104 3.896 4 C -0.159 4.159 5 C -0.057 4.057 6 C -0.034 4.034 7 C 0.257 3.743 8 C -0.504 4.504 9 H 0.074 0.926 10 C 0.100 3.900 11 N -0.771 5.771 12 Si 0.902 3.098 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.280 1.280 16 N -0.448 5.448 17 O -0.402 6.402 18 C -0.064 4.064 19 C -0.216 4.216 20 H 0.092 0.908 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.124 0.876 24 H 0.138 0.862 25 H 0.274 0.726 26 H 0.351 0.649 27 H 0.129 0.871 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 -8.117 -1.820 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.059 3.941 4 C -0.177 4.177 5 C -0.077 4.077 6 C -0.036 4.036 7 C 0.089 3.911 8 C -0.543 4.543 9 H 0.092 0.908 10 C -0.121 4.121 11 N -0.398 5.398 12 Si 0.727 3.273 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.206 1.206 16 N -0.209 5.209 17 O -0.298 6.298 18 C -0.084 4.084 19 C -0.234 4.234 20 H 0.111 0.889 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.142 0.858 24 H 0.156 0.844 25 H 0.085 0.915 26 H 0.190 0.810 27 H 0.147 0.853 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.936 -8.158 -1.634 10.220 hybrid contribution 0.980 0.876 -0.038 1.315 sum -4.955 -7.282 -1.672 8.966 Atomic orbital electron populations 1.22942 0.79302 1.03067 1.01207 1.85989 1.20686 1.27705 1.89454 1.19032 0.92363 0.83605 0.99053 1.20283 0.90954 0.98338 1.08152 1.21151 1.00754 0.90074 0.95698 1.18935 0.92053 0.92762 0.99823 1.19290 0.91968 0.88347 0.91502 1.19378 0.91408 1.15727 1.27776 0.90843 1.25517 0.99452 0.94167 0.93011 1.69655 1.37938 1.19467 1.12772 0.86391 0.82730 0.79159 0.78998 1.18793 1.20098 1.20568 1.76917 1.22135 0.89527 1.32276 1.88566 1.33512 1.12726 1.95004 1.21173 0.94584 0.96656 0.95963 1.21076 0.99235 0.92470 1.10660 0.88916 0.92957 0.92980 0.85812 0.84379 0.91534 0.80977 0.85329 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 15 2 O -0.32 -4.97 10.49 -19.22 -0.20 -5.18 15 3 C 0.10 1.82 6.69 -39.12 -0.26 1.56 15 4 C -0.16 -2.84 9.97 -39.48 -0.39 -3.24 15 5 C -0.06 -1.17 9.41 -39.28 -0.37 -1.54 15 6 C -0.03 -0.79 5.88 -104.88 -0.62 -1.41 15 7 C 0.26 7.02 6.36 -82.80 -0.53 6.49 15 8 C -0.50 -13.93 7.85 -37.85 -0.30 -14.23 15 9 H 0.07 1.92 7.17 -52.49 -0.38 1.55 15 10 C 0.10 2.72 4.27 -17.31 -0.07 2.65 15 11 N -0.77 -21.75 11.52 55.56 0.64 -21.11 15 12 Si 0.90 20.45 29.60 -169.99 -5.03 15.41 15 13 H -0.26 -5.87 7.11 56.52 0.40 -5.47 15 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 16 N -0.45 -12.47 11.08 33.41 0.37 -12.10 15 17 O -0.40 -11.00 11.62 -11.47 -0.13 -11.14 15 18 C -0.06 -1.33 9.57 -39.28 -0.38 -1.70 15 19 C -0.22 -3.78 9.02 -39.48 -0.36 -4.13 15 20 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.05 0.53 7.65 -51.93 -0.40 0.14 15 22 H 0.05 0.52 7.65 -51.93 -0.40 0.13 15 23 H 0.12 1.91 8.06 -52.48 -0.42 1.49 15 24 H 0.14 2.75 6.72 -52.48 -0.35 2.40 15 25 H 0.27 7.15 8.29 -40.82 -0.34 6.81 15 26 H 0.35 7.93 9.28 45.56 0.42 8.35 15 27 H 0.13 2.68 7.55 -52.48 -0.40 2.28 15 28 H 0.12 1.71 6.28 -52.49 -0.33 1.38 15 LS Contribution 251.24 15.07 3.79 3.79 Total: -1.00 -32.13 251.24 -4.66 -36.78 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -1.81 Total: 7.76 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.28 Total: -14.23 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 1.01 Total: -33.20 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.33 Total: -16.31 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.13 -4.66 -36.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078664697.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.586 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds