Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35834 * 116.99955 * 2 1 4 4 C 1.38864 * 119.93396 * 179.97438 * 3 2 1 5 5 C 1.37875 * 120.06432 * 180.29201 * 4 3 2 6 6 C 1.39403 * 119.93518 * 359.47854 * 5 4 3 7 7 C 1.48321 * 120.06921 * 180.24841 * 6 5 4 8 8 C 1.40820 * 119.99446 * 0.27362 * 7 6 5 9 9 H 1.07998 * 120.00272 * 38.77658 * 8 7 6 10 10 C 1.40251 * 119.99822 * 218.77260 * 8 7 6 11 11 N 1.30622 * 119.99754 * 19.51287 * 10 8 7 12 12 Si 1.86803 * 120.00172 * 199.50944 * 10 8 7 13 13 H 1.48497 * 109.47050 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47018 * 120.00170 * 12 10 8 15 15 H 1.48498 * 109.47130 * 240.00173 * 12 10 8 16 16 N 1.31703 * 120.00389 * 180.26916 * 7 6 5 17 17 O 1.41596 * 119.99901 * 186.47390 * 16 7 6 18 18 C 1.39412 * 119.87012 * 0.51759 * 6 5 4 19 19 C 1.37871 * 119.93431 * 359.73487 * 18 6 5 20 20 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46788 * 300.00843 * 1 2 3 22 22 H 1.09005 * 109.46658 * 60.00053 * 1 2 3 23 23 H 1.08004 * 119.96753 * 0.02562 * 4 3 2 24 24 H 1.08005 * 120.03029 * 179.72823 * 5 4 3 25 25 H 0.97006 * 119.99759 * 179.97438 * 11 10 8 26 26 H 0.96699 * 114.00174 * 180.02562 * 17 16 7 27 27 H 1.08003 * 120.03507 * 179.70843 * 18 6 5 28 28 H 1.07995 * 119.96945 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 3.4325 1.2814 0.0005 5 6 4.0612 2.5084 0.0066 6 6 3.3034 3.6784 0.0012 7 6 3.9767 5.0000 0.0022 8 6 5.3829 5.0736 0.0027 9 1 5.9606 4.3741 -0.5832 10 6 6.0334 6.0556 0.7641 11 7 5.4046 6.6429 1.7468 12 14 7.7991 6.5234 0.3729 13 1 8.2811 5.7183 -0.7781 14 1 7.8642 7.9665 0.0289 15 1 8.6555 6.2576 1.5566 16 7 3.2594 6.1046 0.0025 17 8 3.8958 7.3620 -0.1349 18 6 1.9112 3.6039 0.0006 19 6 1.2881 2.3741 -0.0002 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 4.0192 0.3746 0.0005 24 1 5.1399 2.5631 0.0115 25 1 5.8546 7.3218 2.2737 26 1 3.2878 8.1139 -0.1230 27 1 1.3215 4.5087 0.0012 28 1 0.2097 2.3157 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078664697.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = -29.155792 kcal Electronic energy + Delta-G solvation = -14373.228141 eV Core-core repulsion = 11776.495986 eV Total energy + Delta-G solvation = -2596.732156 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92562 -38.64102 -36.92785 -34.93901 -33.24818 -31.99679 -29.99508 -27.97099 -27.62871 -23.95860 -23.08081 -21.13936 -19.05386 -18.89298 -17.28113 -16.77233 -16.55004 -16.51040 -16.03169 -15.34099 -14.92858 -14.44426 -14.14549 -14.05748 -13.56404 -13.22718 -13.00763 -12.80592 -12.55340 -12.46366 -12.07751 -11.93667 -11.64766 -11.01651 -10.20643 -9.87109 -9.68810 -8.60667 -8.52270 -6.55124 0.29807 0.51680 1.33188 1.39413 1.51745 2.10382 2.29586 2.44566 2.93016 3.21068 3.47856 3.96741 4.04454 4.41632 4.47072 4.58533 4.60477 4.64043 4.79277 4.91552 5.18214 5.30665 5.38802 5.57946 5.81522 5.89406 6.07044 6.53242 6.64815 6.84466 7.13032 7.91466 8.49189 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.048080 B = 0.007328 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.228822 B = 3820.078132 C = 4254.989293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.119 3.881 4 C -0.157 4.157 5 C -0.060 4.060 6 C -0.080 4.080 7 C 0.243 3.757 8 C -0.534 4.534 9 H 0.078 0.922 10 C 0.056 3.944 11 N -0.807 5.807 12 Si 0.973 3.027 13 H -0.257 1.257 14 H -0.278 1.278 15 H -0.265 1.265 16 N -0.468 5.468 17 O -0.423 6.423 18 C -0.070 4.070 19 C -0.208 4.208 20 H 0.124 0.876 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.152 0.848 24 H 0.134 0.866 25 H 0.279 0.721 26 H 0.365 0.635 27 H 0.118 0.882 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 -10.078 -2.043 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.074 3.926 4 C -0.176 4.176 5 C -0.080 4.080 6 C -0.081 4.081 7 C 0.075 3.925 8 C -0.573 4.573 9 H 0.096 0.904 10 C -0.163 4.163 11 N -0.436 5.436 12 Si 0.795 3.205 13 H -0.181 1.181 14 H -0.203 1.203 15 H -0.190 1.190 16 N -0.229 5.229 17 O -0.320 6.320 18 C -0.090 4.090 19 C -0.226 4.226 20 H 0.142 0.858 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.169 0.831 24 H 0.152 0.848 25 H 0.089 0.911 26 H 0.206 0.794 27 H 0.136 0.864 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.318 -10.129 -1.856 12.082 hybrid contribution 0.917 1.314 0.027 1.602 sum -5.401 -8.816 -1.829 10.499 Atomic orbital electron populations 1.23359 0.76616 1.05632 1.02162 1.86008 1.23370 1.26161 1.88713 1.19133 0.92387 0.84470 0.96654 1.20507 0.91793 0.98173 1.07079 1.21145 1.00603 0.90341 0.95866 1.18971 0.93436 0.91795 1.03938 1.19974 0.92673 0.89756 0.90080 1.19707 0.92088 1.16831 1.28647 0.90398 1.26405 1.03841 0.93620 0.92419 1.69727 1.39974 1.20158 1.13707 0.85316 0.77470 0.78383 0.79341 1.18079 1.20349 1.18960 1.76904 1.22486 0.89677 1.33880 1.88507 1.34827 1.13455 1.95220 1.21139 0.93620 0.97779 0.96447 1.21312 1.00993 0.91117 1.09184 0.85772 0.92058 0.91873 0.83074 0.84776 0.91112 0.79365 0.86353 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 15 2 O -0.33 -8.78 10.49 -91.69 -0.96 -9.74 15 3 C 0.12 3.82 6.69 22.57 0.15 3.97 15 4 C -0.16 -5.31 9.97 22.33 0.22 -5.09 15 5 C -0.06 -2.44 9.41 22.46 0.21 -2.23 15 6 C -0.08 -3.77 5.88 -20.03 -0.12 -3.88 15 7 C 0.24 13.70 6.36 42.48 0.27 13.97 15 8 C -0.53 -30.23 7.85 23.39 0.18 -30.05 15 9 H 0.08 4.17 7.17 -2.91 -0.02 4.15 15 10 C 0.06 3.05 4.27 85.36 0.36 3.42 15 11 N -0.81 -46.50 11.52 21.88 0.25 -46.25 15 12 Si 0.97 42.29 29.60 68.60 2.03 44.33 15 13 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 15 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 16 N -0.47 -26.89 11.08 -48.21 -0.53 -27.43 15 17 O -0.42 -23.85 11.62 -38.78 -0.45 -24.30 15 18 C -0.07 -2.90 9.57 22.47 0.21 -2.68 15 19 C -0.21 -6.79 9.02 22.33 0.20 -6.59 15 20 H 0.12 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.06 0.98 7.65 -2.39 -0.02 0.97 15 22 H 0.06 0.99 7.65 -2.38 -0.02 0.97 15 23 H 0.15 4.21 8.06 -2.91 -0.02 4.19 15 24 H 0.13 5.43 6.72 -2.91 -0.02 5.41 15 25 H 0.28 14.79 8.29 -92.70 -0.77 14.03 15 26 H 0.36 17.09 9.28 -74.06 -0.69 16.40 15 27 H 0.12 5.03 7.55 -2.91 -0.02 5.01 15 28 H 0.15 3.86 6.28 -2.91 -0.02 3.84 15 Total: -1.00 -69.99 251.24 3.65 -66.33 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.50 Total: 24.84 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 2.81 Total: -27.77 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -0.28 Total: -73.68 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.41 Total: -34.04 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.33 kcal Total: -69.99 3.65 -66.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078664697.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.176 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds