Wall clock time and date at job start Mon Mar 30 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35537 * 117.00360 * 2 1 4 4 C 1.39140 * 119.90399 * 0.02562 * 3 2 1 5 5 C 1.36390 * 120.47665 * 179.97438 * 4 3 2 6 6 C 1.40946 * 120.26000 * 0.02562 * 5 4 3 7 7 C 1.41267 * 120.10321 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99888 * 150.10512 * 7 6 5 9 9 C 1.39863 * 119.99550 * 330.11022 * 7 6 5 10 10 N 1.30897 * 119.99476 * 161.71941 * 9 7 6 11 11 Si 1.86794 * 120.00413 * 341.71524 * 9 7 6 12 12 H 1.48502 * 109.47185 * 95.41570 * 11 9 7 13 13 H 1.48500 * 109.47253 * 215.42306 * 11 9 7 14 14 H 1.48504 * 109.47020 * 335.42219 * 11 9 7 15 15 C 1.40526 * 119.79483 * 359.72581 * 6 5 4 16 16 C 1.38957 * 119.53974 * 0.54490 * 15 6 5 17 17 C 1.47510 * 120.13191 * 179.72969 * 16 15 6 18 18 N 1.29397 * 119.99943 * 179.72406 * 17 16 15 19 19 O 1.41604 * 119.99759 * 179.97438 * 18 17 16 20 20 H 1.09004 * 109.47028 * 300.00467 * 1 2 3 21 21 H 1.09005 * 109.46870 * 59.99741 * 1 2 3 22 22 H 1.09001 * 109.47626 * 180.02562 * 1 2 3 23 23 H 1.08007 * 119.76431 * 0.02562 * 4 3 2 24 24 H 1.08001 * 119.87226 * 180.02562 * 5 4 3 25 25 H 0.97000 * 119.99877 * 179.97438 * 10 9 7 26 26 H 1.08005 * 120.23196 * 180.30229 * 15 6 5 27 27 H 1.08002 * 120.00476 * 359.45301 * 17 16 15 28 28 H 0.96700 * 113.99308 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 1.2847 2.3733 0.0005 5 6 1.8918 3.5946 0.0011 6 6 3.2981 3.6888 0.0005 7 6 3.9234 4.9555 0.0016 8 1 4.8898 5.0802 0.4675 9 6 3.2910 6.0480 -0.6005 10 7 3.6675 7.2664 -0.3053 11 14 1.9092 5.7685 -1.8260 12 1 0.6020 5.8602 -1.1275 13 1 1.9753 6.8017 -2.8906 14 1 2.0520 4.4213 -2.4342 15 6 4.0763 2.5186 0.0053 16 6 3.4490 1.2787 -0.0010 17 6 4.2531 0.0421 -0.0022 18 7 3.6663 -1.1112 -0.0027 19 8 4.4383 -2.2983 -0.0043 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.2064 2.3106 0.0014 24 1 1.2926 4.4932 0.0019 25 1 3.2292 8.0241 -0.7232 26 1 5.1544 2.5825 0.0098 27 1 5.3316 0.0991 -0.0070 28 1 3.9120 -3.1096 -0.0049 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082509325.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:43 Heat of formation + Delta-G solvation = -5.313934 kcal Electronic energy + Delta-G solvation = -14460.036608 eV Core-core repulsion = 11864.338313 eV Total energy + Delta-G solvation = -2595.698295 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13550 -36.67753 -36.28460 -33.72025 -32.72709 -29.90391 -29.44673 -27.06563 -24.49218 -23.03687 -20.81780 -19.81697 -17.41426 -17.13998 -17.06262 -15.54474 -15.03657 -14.95363 -14.39101 -14.06680 -13.30019 -13.18443 -12.94726 -12.68009 -12.42943 -12.05206 -11.25847 -11.22842 -10.96044 -10.48272 -10.26478 -10.16411 -9.72533 -9.67144 -9.32440 -9.10456 -7.81120 -7.21247 -6.95898 -4.44403 1.69910 2.48118 3.03833 3.15775 3.19335 3.31562 3.54824 3.93801 4.15539 4.43731 5.26423 5.28148 5.52172 5.60893 5.75625 5.88503 5.97071 6.22286 6.45216 6.61896 6.72561 6.97485 7.03464 7.28602 7.37478 7.65238 7.78769 8.17987 8.24872 8.33891 8.57386 8.75385 10.07330 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.037366 B = 0.008717 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.173560 B = 3211.389432 C = 3761.346207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.299 6.299 3 C 0.040 3.960 4 C -0.165 4.165 5 C -0.180 4.180 6 C 0.065 3.935 7 C -0.449 4.449 8 H 0.092 0.908 9 C 0.084 3.916 10 N -0.811 5.811 11 Si 0.904 3.096 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.244 1.244 15 C -0.145 4.145 16 C -0.058 4.058 17 C 0.155 3.845 18 N -0.316 5.316 19 O -0.438 6.438 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.284 0.716 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 -8.773 -0.933 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.212 6.212 3 C -0.007 4.007 4 C -0.184 4.184 5 C -0.200 4.200 6 C 0.062 3.938 7 C -0.478 4.478 8 H 0.110 0.890 9 C -0.134 4.134 10 N -0.436 5.436 11 Si 0.731 3.269 12 H -0.197 1.197 13 H -0.216 1.216 14 H -0.168 1.168 15 C -0.167 4.167 16 C -0.060 4.060 17 C -0.054 4.054 18 N -0.061 5.061 19 O -0.342 6.342 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.103 0.897 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.095 0.905 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.595 -8.818 -0.940 9.987 hybrid contribution -0.433 0.045 -0.514 0.673 sum -5.027 -8.772 -1.454 10.215 Atomic orbital electron populations 1.22814 0.81258 1.02094 1.00289 1.86099 1.18561 1.26807 1.89695 1.18680 0.90858 0.83675 1.07476 1.20495 0.98194 0.92594 1.07093 1.20820 0.95178 0.95815 1.08196 1.17575 0.90940 0.93295 0.92006 1.19323 1.05972 0.90424 1.32116 0.88965 1.26080 0.96752 0.94300 0.96261 1.69719 1.38577 0.99442 1.35860 0.86424 0.80432 0.79831 0.80239 1.19720 1.21628 1.16761 1.21003 0.98578 0.89551 1.07561 1.17458 0.88957 0.90274 1.09351 1.24394 0.98031 0.90449 0.92489 1.77049 1.20959 0.92782 1.15283 1.88344 1.35245 1.14799 1.95839 0.93825 0.93903 0.89732 0.87555 0.87567 0.90518 0.86458 0.87051 0.75664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.80 101.05 0.99 1.45 15 2 O -0.30 -5.80 8.35 -18.30 -0.15 -5.95 15 3 C 0.04 0.84 6.72 -38.34 -0.26 0.59 15 4 C -0.16 -3.46 8.95 -39.91 -0.36 -3.82 15 5 C -0.18 -4.13 7.10 -39.22 -0.28 -4.41 15 6 C 0.06 1.56 5.10 -106.86 -0.54 1.01 15 7 C -0.45 -11.61 9.55 -37.82 -0.36 -11.97 15 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 15 9 C 0.08 2.13 5.40 -17.34 -0.09 2.04 15 10 N -0.81 -21.09 13.93 55.54 0.77 -20.32 15 11 Si 0.90 19.99 24.51 -169.99 -4.17 15.82 15 12 H -0.27 -5.78 6.70 56.52 0.38 -5.40 15 13 H -0.29 -6.21 7.11 56.52 0.40 -5.80 15 14 H -0.24 -5.53 6.87 56.52 0.39 -5.14 15 15 C -0.15 -3.19 9.53 -38.45 -0.37 -3.55 15 16 C -0.06 -1.24 5.88 -104.95 -0.62 -1.85 15 17 C 0.16 3.02 10.90 -14.80 -0.16 2.85 15 18 N -0.32 -6.12 9.96 32.11 0.32 -5.80 15 19 O -0.44 -7.20 14.95 -11.47 -0.17 -7.37 15 20 H 0.04 0.60 7.64 -51.93 -0.40 0.21 15 21 H 0.04 0.60 7.65 -51.93 -0.40 0.20 15 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.11 1.93 6.26 -52.48 -0.33 1.60 15 24 H 0.11 2.42 4.71 -52.49 -0.25 2.17 15 25 H 0.28 6.71 8.30 -40.82 -0.34 6.38 15 26 H 0.12 2.34 8.06 -52.48 -0.42 1.92 15 27 H 0.11 1.91 8.06 -52.49 -0.42 1.49 15 28 H 0.40 4.47 9.28 45.56 0.42 4.89 15 LS Contribution 247.46 15.07 3.73 3.73 Total: -1.00 -28.88 247.46 -3.52 -32.40 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -1.81 Total: 5.15 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.05 Total: -17.66 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 1.09 Total: -26.11 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.32 Total: -13.32 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.17 Total: 15.82 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.88 -3.52 -32.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082509325.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.088 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds