Wall clock time and date at job start Mon Mar 30 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35537 * 117.00360 * 2 1 4 4 C 1.39140 * 119.90399 * 0.02562 * 3 2 1 5 5 C 1.36390 * 120.47665 * 179.97438 * 4 3 2 6 6 C 1.40946 * 120.26000 * 0.02562 * 5 4 3 7 7 C 1.41267 * 120.10321 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99888 * 150.10512 * 7 6 5 9 9 C 1.39863 * 119.99550 * 330.11022 * 7 6 5 10 10 N 1.30897 * 119.99476 * 161.71941 * 9 7 6 11 11 Si 1.86794 * 120.00413 * 341.71524 * 9 7 6 12 12 H 1.48502 * 109.47185 * 95.41570 * 11 9 7 13 13 H 1.48500 * 109.47253 * 215.42306 * 11 9 7 14 14 H 1.48504 * 109.47020 * 335.42219 * 11 9 7 15 15 C 1.40526 * 119.79483 * 359.72581 * 6 5 4 16 16 C 1.38957 * 119.53974 * 0.54490 * 15 6 5 17 17 C 1.47510 * 120.13191 * 179.72969 * 16 15 6 18 18 N 1.29397 * 119.99943 * 179.72406 * 17 16 15 19 19 O 1.41604 * 119.99759 * 179.97438 * 18 17 16 20 20 H 1.09004 * 109.47028 * 300.00467 * 1 2 3 21 21 H 1.09005 * 109.46870 * 59.99741 * 1 2 3 22 22 H 1.09001 * 109.47626 * 180.02562 * 1 2 3 23 23 H 1.08007 * 119.76431 * 0.02562 * 4 3 2 24 24 H 1.08001 * 119.87226 * 180.02562 * 5 4 3 25 25 H 0.97000 * 119.99877 * 179.97438 * 10 9 7 26 26 H 1.08005 * 120.23196 * 180.30229 * 15 6 5 27 27 H 1.08002 * 120.00476 * 359.45301 * 17 16 15 28 28 H 0.96700 * 113.99308 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 1.2847 2.3733 0.0005 5 6 1.8918 3.5946 0.0011 6 6 3.2981 3.6888 0.0005 7 6 3.9234 4.9555 0.0016 8 1 4.8898 5.0802 0.4675 9 6 3.2910 6.0480 -0.6005 10 7 3.6675 7.2664 -0.3053 11 14 1.9092 5.7685 -1.8260 12 1 0.6020 5.8602 -1.1275 13 1 1.9753 6.8017 -2.8906 14 1 2.0520 4.4213 -2.4342 15 6 4.0763 2.5186 0.0053 16 6 3.4490 1.2787 -0.0010 17 6 4.2531 0.0421 -0.0022 18 7 3.6663 -1.1112 -0.0027 19 8 4.4383 -2.2983 -0.0043 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.2064 2.3106 0.0014 24 1 1.2926 4.4932 0.0019 25 1 3.2292 8.0241 -0.7232 26 1 5.1544 2.5825 0.0098 27 1 5.3316 0.0991 -0.0070 28 1 3.9120 -3.1096 -0.0049 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082509325.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:43 Heat of formation + Delta-G solvation = -25.806453 kcal Electronic energy + Delta-G solvation = -14460.925231 eV Core-core repulsion = 11864.338313 eV Total energy + Delta-G solvation = -2596.586917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73789 -38.26008 -37.73523 -35.43120 -34.33639 -31.64089 -31.05358 -28.40455 -26.21517 -24.65888 -22.45271 -21.48021 -19.08757 -18.70396 -18.60648 -17.20048 -16.60422 -16.35031 -15.91898 -15.61654 -15.05386 -14.59932 -14.58101 -14.30329 -14.03173 -13.68511 -12.88453 -12.72714 -12.61975 -12.11479 -12.01184 -11.67146 -11.43579 -11.25445 -10.89104 -10.75819 -9.47655 -8.90525 -8.82287 -6.35307 0.07381 0.75635 1.28341 1.42932 1.48168 1.64482 2.15335 2.21846 2.64950 2.74055 3.46674 3.79517 4.12679 4.34768 4.50493 4.51582 4.67036 4.77037 4.79182 4.95029 5.06791 5.26440 5.41222 5.60405 5.84297 5.91603 6.08834 6.33939 6.59920 6.83009 6.88033 6.97463 8.26744 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.037366 B = 0.008717 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.173560 B = 3211.389432 C = 3761.346207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.310 6.310 3 C 0.052 3.948 4 C -0.169 4.169 5 C -0.187 4.187 6 C 0.043 3.957 7 C -0.482 4.482 8 H 0.061 0.939 9 C 0.048 3.952 10 N -0.855 5.855 11 Si 0.955 3.045 12 H -0.256 1.256 13 H -0.280 1.280 14 H -0.253 1.253 15 C -0.144 4.144 16 C -0.069 4.069 17 C 0.145 3.855 18 N -0.325 5.325 19 O -0.430 6.430 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.115 0.885 23 H 0.139 0.861 24 H 0.107 0.893 25 H 0.291 0.709 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 -11.134 -1.417 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.223 6.223 3 C 0.004 3.996 4 C -0.187 4.187 5 C -0.207 4.207 6 C 0.041 3.959 7 C -0.512 4.512 8 H 0.079 0.921 9 C -0.165 4.165 10 N -0.483 5.483 11 Si 0.779 3.221 12 H -0.181 1.181 13 H -0.207 1.207 14 H -0.176 1.176 15 C -0.166 4.166 16 C -0.071 4.071 17 C -0.064 4.064 18 N -0.067 5.067 19 O -0.342 6.342 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.133 0.867 23 H 0.156 0.844 24 H 0.124 0.876 25 H 0.102 0.898 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -6.340 -11.194 -1.417 12.942 hybrid contribution 0.057 0.397 -0.301 0.502 sum -6.283 -10.797 -1.718 12.609 Atomic orbital electron populations 1.23186 0.78533 1.04559 1.01244 1.86094 1.21359 1.25688 1.89150 1.18939 0.91144 0.84556 1.04938 1.20775 0.99932 0.91642 1.06379 1.20921 0.94682 0.96815 1.08264 1.17687 0.91928 0.93156 0.93118 1.19298 1.05543 0.92086 1.34265 0.92054 1.26704 0.98711 0.93848 0.97257 1.69757 1.40618 1.00197 1.37687 0.85636 0.78673 0.79254 0.78513 1.18098 1.20674 1.17633 1.21159 0.99260 0.89517 1.06634 1.17652 0.89647 0.90833 1.08970 1.24297 0.98771 0.89904 0.93467 1.76867 1.22131 0.93615 1.14108 1.88330 1.35546 1.14848 1.95427 0.92769 0.92905 0.86723 0.84381 0.87569 0.89837 0.85406 0.85150 0.73081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.80 113.37 1.11 1.61 15 2 O -0.31 -10.95 8.35 -88.41 -0.74 -11.69 15 3 C 0.05 2.06 6.72 23.07 0.16 2.21 15 4 C -0.17 -6.64 8.95 22.06 0.20 -6.45 15 5 C -0.19 -8.38 7.10 22.50 0.16 -8.22 15 6 C 0.04 2.11 5.10 -21.31 -0.11 2.01 15 7 C -0.48 -25.93 9.55 23.41 0.22 -25.71 15 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 15 9 C 0.05 2.51 5.40 85.23 0.46 2.97 15 10 N -0.86 -46.06 13.93 21.81 0.30 -45.76 15 11 Si 0.96 41.09 24.51 68.60 1.68 42.77 15 12 H -0.26 -10.25 6.70 99.48 0.67 -9.58 15 13 H -0.28 -11.48 7.11 99.48 0.71 -10.77 15 14 H -0.25 -11.07 6.87 99.48 0.68 -10.38 15 15 C -0.14 -6.31 9.53 23.00 0.22 -6.09 15 16 C -0.07 -2.82 5.88 -20.07 -0.12 -2.94 15 17 C 0.14 5.29 10.90 87.50 0.95 6.25 15 18 N -0.33 -11.61 9.96 -52.32 -0.52 -12.13 15 19 O -0.43 -12.67 14.95 -38.79 -0.58 -13.25 15 20 H 0.05 1.26 7.64 -2.38 -0.02 1.24 15 21 H 0.05 1.24 7.65 -2.38 -0.02 1.22 15 22 H 0.11 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.14 4.47 6.26 -2.91 -0.02 4.45 15 24 H 0.11 4.71 4.71 -2.91 -0.01 4.70 15 25 H 0.29 14.15 8.30 -92.71 -0.77 13.38 15 26 H 0.13 5.15 8.06 -2.91 -0.02 5.13 15 27 H 0.13 4.19 8.06 -2.91 -0.02 4.16 15 28 H 0.42 7.85 9.28 -74.06 -0.69 7.17 15 Total: -1.00 -61.84 247.46 3.84 -58.00 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.44 Total: 16.41 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.25 Total: -34.35 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.22 Total: -57.89 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.32 Total: -24.94 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.68 Total: 42.77 kcal Total: -61.84 3.84 -58.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082509325.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.192 kcal (2) G-P(sol) polarization free energy of solvation -61.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds