Wall clock time and date at job start Mon Mar 30 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30611 * 1 3 3 Si 1.86802 * 120.00303 * 2 1 4 4 H 1.48504 * 109.46750 * 269.99922 * 3 2 1 5 5 H 1.48504 * 109.46770 * 29.99419 * 3 2 1 6 6 H 1.48499 * 109.47497 * 149.99615 * 3 2 1 7 7 C 1.40167 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99803 * 180.02562 * 7 2 1 9 9 C 1.41533 * 119.99915 * 359.97438 * 7 2 1 10 10 O 1.21815 * 119.99517 * 5.01514 * 9 7 2 11 11 N 1.34772 * 119.99880 * 185.00781 * 9 7 2 12 12 C 1.47622 * 121.95220 * 354.70978 * 11 9 7 13 13 C 1.53278 * 108.57421 * 223.47303 * 12 11 9 14 14 C 1.53313 * 109.88658 * 297.08068 * 13 12 11 15 15 N 1.46502 * 108.83291 * 49.66982 * 14 13 12 16 16 N 1.39392 * 128.66069 * 160.80852 * 15 14 13 17 17 C 1.31306 * 108.39666 * 180.19891 * 16 15 14 18 18 C 1.39808 * 108.60604 * 359.93959 * 17 16 15 19 19 C 1.35554 * 107.62265 * 359.97438 * 18 17 16 20 20 H 0.97006 * 120.00242 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.62671 * 103.74914 * 12 11 9 22 22 H 1.09000 * 109.77190 * 343.28528 * 12 11 9 23 23 H 1.08997 * 109.40207 * 176.95029 * 13 12 11 24 24 H 1.08996 * 109.33144 * 57.16150 * 13 12 11 25 25 H 1.09007 * 109.57840 * 289.86312 * 14 13 12 26 26 H 1.08997 * 109.68347 * 169.53880 * 14 13 12 27 27 H 1.08003 * 125.69674 * 179.97438 * 17 16 15 28 28 H 1.08003 * 126.18552 * 180.24389 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4877 2.0463 -1.4001 5 1 1.4376 2.6527 0.6999 6 1 3.5377 1.4402 0.7001 7 6 2.0070 -1.2139 0.0005 8 1 3.0869 -1.2138 0.0010 9 6 1.2993 -2.4396 0.0016 10 8 0.0846 -2.4416 -0.0901 11 7 1.9693 -3.6044 0.1040 12 6 3.4445 -3.6599 0.1020 13 6 3.8883 -4.8179 -0.7989 14 6 3.3827 -6.1473 -0.2265 15 7 1.9535 -6.0215 0.0700 16 7 1.0095 -7.0311 0.2503 17 6 -0.1536 -6.4723 0.4936 18 6 0.0070 -5.0835 0.4787 19 6 1.3116 -4.8240 0.2176 20 1 -0.4851 0.8401 -0.0004 21 1 3.8060 -3.8265 1.1166 22 1 3.8482 -2.7228 -0.2812 23 1 4.9767 -4.8377 -0.8534 24 1 3.4782 -4.6749 -1.7986 25 1 3.9264 -6.3812 0.6889 26 1 3.5359 -6.9429 -0.9556 27 1 -1.0795 -6.9977 0.6755 28 1 -0.7674 -4.3502 0.6491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116665305.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:22 Heat of formation + Delta-G solvation = 25.925456 kcal Electronic energy + Delta-G solvation = -15078.498266 eV Core-core repulsion = 12516.447364 eV Total energy + Delta-G solvation = -2562.050902 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.37979 -39.64131 -37.32220 -34.97838 -34.19292 -31.46197 -30.28512 -28.47396 -26.83114 -23.75599 -23.26090 -21.67325 -19.96813 -18.45818 -18.03828 -17.66843 -16.80477 -16.05912 -15.97245 -15.43937 -15.14237 -14.81773 -14.31207 -13.72803 -13.69032 -13.33229 -13.22137 -12.76673 -12.67740 -12.25084 -12.05932 -12.02907 -11.56328 -11.16682 -10.90779 -9.94879 -9.72378 -8.72232 -8.42938 -7.06106 0.96453 1.39558 1.42572 1.50824 1.59700 1.95493 2.19647 2.42774 2.52234 3.46011 3.51985 3.85967 4.04019 4.11697 4.42430 4.50722 4.56547 4.60799 4.78446 4.86739 5.08438 5.17712 5.24362 5.45756 5.78220 5.93225 6.02359 6.40189 6.69626 6.85305 7.23440 8.29291 8.51625 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.043161 B = 0.009345 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.573940 B = 2995.400027 C = 3584.594016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.030 3.970 3 Si 1.005 2.995 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.241 1.241 7 C -0.554 4.554 8 H 0.104 0.896 9 C 0.535 3.465 10 O -0.607 6.607 11 N -0.570 5.570 12 C 0.096 3.904 13 C -0.140 4.140 14 C 0.127 3.873 15 N -0.405 5.405 16 N -0.325 5.325 17 C 0.064 3.936 18 C -0.331 4.331 19 C 0.324 3.676 20 H 0.281 0.719 21 H 0.075 0.925 22 H 0.108 0.892 23 H 0.153 0.847 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.214 0.786 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.917 -5.249 -0.205 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.188 4.188 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.164 1.164 7 C -0.588 4.588 8 H 0.122 0.878 9 C 0.346 3.654 10 O -0.492 6.492 11 N -0.300 5.300 12 C -0.026 4.026 13 C -0.179 4.179 14 C 0.008 3.992 15 N -0.197 5.197 16 N -0.148 5.148 17 C -0.121 4.121 18 C -0.364 4.364 19 C 0.103 3.897 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.126 0.874 23 H 0.170 0.830 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.230 0.770 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.915 -6.196 -0.436 12.559 hybrid contribution -0.788 1.467 0.115 1.669 sum 10.127 -4.729 -0.321 11.181 Atomic orbital electron populations 1.70163 1.09950 1.29774 1.33060 1.27133 0.95495 1.05334 0.90845 0.84909 0.78946 0.74200 0.79663 1.18395 1.19849 1.16417 1.20569 0.95860 0.89471 1.52922 0.87837 1.17516 0.87105 0.82696 0.78070 1.90631 1.16009 1.86048 1.56539 1.46166 1.07997 1.02541 1.73332 1.22173 0.77899 1.01574 1.00919 1.22320 1.05062 0.91780 0.98703 1.22091 0.73980 1.00161 1.02964 1.49180 1.09557 1.01455 1.59470 1.77034 0.98043 1.11802 1.27889 1.24114 0.97497 0.92077 0.98394 1.20880 0.95747 0.96941 1.22866 1.18734 0.91949 0.82069 0.96995 0.90910 0.90681 0.87368 0.82952 0.92030 0.88200 0.87155 0.76986 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.08 11.74 21.86 0.26 -46.82 15 2 C 0.03 1.60 5.50 85.34 0.47 2.07 15 3 Si 1.00 37.71 29.56 68.60 2.03 39.74 15 4 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 15 6 H -0.24 -8.18 7.11 99.48 0.71 -7.47 15 7 C -0.55 -29.52 8.69 23.55 0.20 -29.32 15 8 H 0.10 4.71 5.84 -2.91 -0.02 4.69 15 9 C 0.53 30.99 7.45 85.05 0.63 31.62 15 10 O -0.61 -40.69 12.98 -4.72 -0.06 -40.75 15 11 N -0.57 -27.21 3.00 -643.90 -1.93 -29.14 15 12 C 0.10 3.18 6.18 86.26 0.53 3.71 15 13 C -0.14 -3.39 6.09 30.79 0.19 -3.20 15 14 C 0.13 3.32 7.33 86.48 0.63 3.96 15 15 N -0.41 -15.72 4.09 -344.15 -1.41 -17.13 15 16 N -0.33 -12.81 12.63 -56.81 -0.72 -13.53 15 17 C 0.06 2.54 12.01 85.15 1.02 3.57 15 18 C -0.33 -16.23 9.79 22.03 0.22 -16.02 15 19 C 0.32 15.29 7.08 130.90 0.93 16.22 15 20 H 0.28 14.81 8.29 -92.70 -0.77 14.04 15 21 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.11 3.46 5.86 -2.39 -0.01 3.45 15 23 H 0.15 2.05 8.14 -2.39 -0.02 2.03 15 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.10 2.13 8.14 -2.38 -0.02 2.11 15 26 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 27 H 0.21 6.33 8.06 -2.91 -0.02 6.30 15 28 H 0.12 6.81 6.71 -2.91 -0.02 6.79 15 Total: -1.00 -78.89 240.91 4.18 -74.71 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 1.18 Total: 20.32 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 4.83 Total: 12.60 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.80 Total: -106.62 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.06 Total: -40.75 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -78.89 4.18 -74.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116665305.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.635 kcal (2) G-P(sol) polarization free energy of solvation -78.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds