Wall clock time and date at job start Mon Mar 30 2020 03:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48497 * 109.47271 * 270.00142 * 3 2 1 5 5 H 1.48502 * 109.46870 * 29.99925 * 3 2 1 6 6 H 1.48498 * 109.47075 * 149.99780 * 3 2 1 7 7 C 1.40044 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00255 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99476 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00234 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00089 * 180.02562 * 11 9 7 13 13 H 1.09003 * 110.52784 * 327.58419 * 12 11 9 14 14 C 1.54537 * 110.47750 * 204.99689 * 12 11 9 15 15 C 1.54392 * 101.80609 * 216.16369 * 14 12 11 16 16 N 1.47008 * 105.53071 * 25.69657 * 15 14 12 17 17 C 1.37192 * 141.60297 * 162.96026 * 16 15 14 18 18 C 1.34558 * 106.84099 * 179.82349 * 17 16 15 19 19 N 1.34009 * 108.03047 * 0.03150 * 18 17 16 20 20 C 1.30910 * 109.30229 * 0.06159 * 19 18 17 21 21 H 0.96996 * 120.00488 * 359.97438 * 1 2 3 22 22 H 0.97004 * 119.99796 * 359.97438 * 11 9 7 23 23 H 1.09002 * 110.96950 * 98.02158 * 14 12 11 24 24 H 1.09003 * 110.96677 * 334.30016 * 14 12 11 25 25 H 1.08992 * 110.23323 * 144.71489 * 15 14 12 26 26 H 1.09007 * 110.22840 * 266.60151 * 15 14 12 27 27 H 1.07999 * 126.57772 * 359.79368 * 17 16 15 28 28 H 1.07998 * 125.98499 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4000 5 1 1.4380 2.6527 0.7000 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0017 10 8 0.0583 -2.4805 -0.0017 11 7 1.9491 -3.6476 -0.0017 12 6 1.2167 -4.9164 -0.0034 13 1 0.2786 -4.8170 0.5428 14 6 2.0821 -6.0410 0.6086 15 6 1.6800 -7.2551 -0.2562 16 7 1.2290 -6.6935 -1.5377 17 6 0.9816 -7.0484 -2.8396 18 6 0.5645 -5.9375 -3.4741 19 7 0.5573 -4.9319 -2.5882 20 6 0.9567 -5.3779 -1.4241 21 1 -0.4851 0.8400 0.0004 22 1 2.9192 -3.6476 -0.0013 23 1 1.8251 -6.2053 1.6551 24 1 3.1437 -5.8192 0.5000 25 1 2.5388 -7.9079 -0.4120 26 1 0.8697 -7.8062 0.2213 27 1 1.0994 -8.0309 -3.2724 28 1 0.2848 -5.8683 -4.5149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141290357.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:15 Heat of formation + Delta-G solvation = 10.256449 kcal Electronic energy + Delta-G solvation = -14706.657924 eV Core-core repulsion = 12143.927563 eV Total energy + Delta-G solvation = -2562.730362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.31166 -39.41379 -37.28866 -34.83585 -34.20294 -31.62862 -29.47503 -28.73658 -26.90055 -23.10452 -22.32930 -21.80922 -20.61968 -19.26659 -17.83676 -17.31527 -17.18126 -15.89417 -15.79924 -15.32150 -15.13101 -14.62430 -14.32812 -14.21552 -13.67122 -13.29904 -13.13242 -12.83120 -12.71760 -12.54228 -12.10620 -11.96915 -10.91975 -10.72830 -10.50878 -9.87672 -9.60275 -9.26433 -8.25723 -6.83048 1.11235 1.40252 1.43063 1.57680 1.89132 2.19900 2.28719 2.50337 2.96070 3.23494 3.47389 3.78788 3.88202 4.01113 4.19239 4.42459 4.48989 4.60471 4.71904 4.91630 4.98826 5.33788 5.38139 5.88385 5.93808 6.12751 6.26098 6.28472 6.89355 7.33570 7.54805 8.53696 8.71669 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.046331 B = 0.007510 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.201353 B = 3727.220034 C = 3994.614661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.244 1.244 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.543 3.457 10 O -0.624 6.624 11 N -0.738 5.738 12 C 0.219 3.781 13 H 0.072 0.928 14 C -0.117 4.117 15 C 0.105 3.895 16 N -0.479 5.479 17 C -0.022 4.022 18 C -0.067 4.067 19 N -0.536 5.536 20 C 0.155 3.845 21 H 0.273 0.727 22 H 0.397 0.603 23 H 0.133 0.867 24 H 0.106 0.894 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.219 0.781 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 -15.176 0.754 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.610 4.610 8 H 0.106 0.894 9 C 0.347 3.653 10 O -0.510 6.510 11 N -0.392 5.392 12 C 0.110 3.890 13 H 0.090 0.910 14 C -0.156 4.156 15 C -0.015 4.015 16 N -0.163 5.163 17 C -0.155 4.155 18 C -0.214 4.214 19 N -0.255 5.255 20 C -0.111 4.111 21 H 0.083 0.917 22 H 0.231 0.769 23 H 0.151 0.849 24 H 0.125 0.875 25 H 0.147 0.853 26 H 0.130 0.870 27 H 0.236 0.764 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.048 -14.537 0.655 16.169 hybrid contribution 0.329 0.172 -0.335 0.501 sum 7.377 -14.365 0.319 16.152 Atomic orbital electron populations 1.70208 1.09627 1.28816 1.36627 1.26995 0.95504 1.05032 0.91214 0.85011 0.78931 0.75045 0.79201 1.19154 1.19635 1.16736 1.21421 0.94693 0.90110 1.54810 0.89436 1.18578 0.86860 0.84265 0.75553 1.90566 1.16270 1.87664 1.56475 1.45726 1.08926 1.03825 1.80689 1.19840 0.97152 0.86095 0.85923 0.91027 1.23087 1.01021 0.89918 1.01535 1.22730 1.03016 0.96974 0.78738 1.46846 1.48811 1.10893 1.09786 1.22908 1.08407 1.02176 0.81982 1.22869 1.08916 0.88998 1.00646 1.69862 1.20647 1.34109 1.00897 1.25282 1.03729 0.84395 0.97651 0.91701 0.76875 0.84901 0.87508 0.85297 0.86994 0.76430 0.79824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.83 11.83 21.83 0.26 -52.57 15 2 C 0.03 1.59 5.50 85.30 0.47 2.06 15 3 Si 1.00 42.62 29.56 68.60 2.03 44.65 15 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 15 6 H -0.24 -9.49 7.11 99.48 0.71 -8.78 15 7 C -0.57 -33.87 9.54 24.83 0.24 -33.63 15 8 H 0.09 4.60 7.85 -2.91 -0.02 4.58 15 9 C 0.54 32.94 7.75 86.36 0.67 33.61 15 10 O -0.62 -44.01 14.67 -4.32 -0.06 -44.07 15 11 N -0.74 -34.11 5.13 -446.48 -2.29 -36.40 15 12 C 0.22 8.58 3.28 45.06 0.15 8.73 15 13 H 0.07 3.25 7.56 -2.39 -0.02 3.24 15 14 C -0.12 -2.49 6.86 31.59 0.22 -2.27 15 15 C 0.11 1.85 7.78 86.76 0.67 2.52 15 16 N -0.48 -14.10 3.61 -509.06 -1.84 -15.93 15 17 C -0.02 -0.60 12.04 83.01 1.00 0.39 15 18 C -0.07 -2.42 11.86 83.52 0.99 -1.42 15 19 N -0.54 -26.06 11.26 -187.27 -2.11 -28.17 15 20 C 0.15 6.51 8.22 138.37 1.14 7.65 15 21 H 0.27 15.89 8.29 -92.71 -0.77 15.12 15 22 H 0.40 15.56 8.41 -92.70 -0.78 14.78 15 23 H 0.13 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.11 1.93 7.82 -2.39 -0.02 1.91 15 25 H 0.13 1.29 8.14 -2.39 -0.02 1.27 15 26 H 0.11 1.50 8.14 -2.38 -0.02 1.48 15 27 H 0.22 3.49 8.06 -2.91 -0.02 3.47 15 28 H 0.18 5.53 8.06 -2.91 -0.02 5.50 15 Total: -1.00 -92.96 250.67 1.94 -91.03 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.41 Total: 23.84 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 5.54 Total: 17.63 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -5.98 Total: -133.07 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.06 Total: -44.07 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -92.96 1.94 -91.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141290357.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.283 kcal (2) G-P(sol) polarization free energy of solvation -92.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds