Wall clock time and date at job start Mon Mar 30 2020 03:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86798 * 119.99466 * 2 1 4 4 H 1.48497 * 109.47673 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47084 * 239.99736 * 3 2 1 6 6 H 1.48510 * 109.46991 * 120.00000 * 3 2 1 7 7 C 1.40045 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00222 * 4.67054 * 7 2 1 9 9 C 1.46373 * 119.99626 * 184.67774 * 7 2 1 10 10 O 1.21687 * 120.00293 * 6.23890 * 9 7 2 11 11 N 1.34780 * 119.99746 * 186.24684 * 9 7 2 12 12 C 1.46505 * 119.99680 * 179.97438 * 11 9 7 13 13 H 1.08998 * 110.42628 * 36.06677 * 12 11 9 14 14 C 1.54540 * 110.47474 * 158.72205 * 12 11 9 15 15 C 1.54361 * 101.77980 * 143.83567 * 14 12 11 16 16 N 1.47010 * 105.54289 * 334.33051 * 15 14 12 17 17 C 1.37196 * 141.59712 * 196.97617 * 16 15 14 18 18 C 1.34561 * 106.83747 * 180.20987 * 17 16 15 19 19 N 1.34010 * 108.02926 * 359.97278 * 18 17 16 20 20 C 1.30904 * 109.30051 * 359.89390 * 19 18 17 21 21 H 0.97000 * 120.00092 * 174.89925 * 1 2 3 22 22 H 0.97002 * 119.99928 * 359.97438 * 11 9 7 23 23 H 1.09001 * 110.97019 * 261.98388 * 14 12 11 24 24 H 1.09005 * 110.96651 * 25.74136 * 14 12 11 25 25 H 1.09000 * 110.27124 * 215.29352 * 15 14 12 26 26 H 1.09002 * 110.26391 * 93.36893 * 15 14 12 27 27 H 1.07999 * 126.58192 * 0.18780 * 17 16 15 28 28 H 1.08000 * 125.98757 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 -1.2125 6 1 3.0944 1.6965 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 1.4697 -2.1465 -0.0771 9 6 3.4671 -1.2149 0.1028 10 8 4.0644 -0.1738 0.3031 11 7 4.1499 -2.3700 -0.0240 12 6 5.6114 -2.3719 0.0789 13 1 5.9414 -1.6460 0.8220 14 6 6.1264 -3.7851 0.4338 15 6 7.4394 -3.8543 -0.3748 16 7 7.2598 -2.9232 -1.4982 17 6 7.7812 -2.6082 -2.7274 18 6 7.0614 -1.5757 -3.2032 19 7 6.1268 -1.2676 -2.2936 20 6 6.2382 -2.0741 -1.2685 21 1 -0.4850 -0.8367 -0.0747 22 1 3.6738 -3.1999 -0.1834 23 1 6.3211 -3.8723 1.5028 24 1 5.4243 -4.5506 0.1030 25 1 7.6015 -4.8662 -0.7461 26 1 8.2806 -3.5410 0.2437 27 1 8.6106 -3.0952 -3.2188 28 1 7.2107 -1.0817 -4.1520 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141290358.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:21 Heat of formation + Delta-G solvation = 25.891954 kcal Electronic energy + Delta-G solvation = -14824.744745 eV Core-core repulsion = 12262.692389 eV Total energy + Delta-G solvation = -2562.052355 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.13921 -37.96937 -36.11464 -33.18968 -32.70790 -30.30977 -28.40879 -26.98118 -25.22277 -22.03801 -20.81961 -20.32541 -19.22885 -17.97562 -16.77126 -16.16255 -15.19805 -14.65013 -14.15933 -13.94290 -13.62956 -13.51586 -13.09809 -12.74133 -12.48279 -12.02780 -12.00037 -11.79720 -11.14889 -10.30814 -10.10252 -9.40653 -9.32500 -9.13191 -8.87033 -8.18313 -8.02977 -7.81636 -6.91452 -4.85612 2.28430 2.86952 3.51786 3.70863 3.79695 4.00937 4.17989 4.36713 4.39985 4.67047 4.70560 4.72741 4.89660 5.09103 5.21382 5.43995 5.56465 5.63232 5.80332 5.88212 6.05997 6.54033 7.12640 7.27386 7.51132 7.62906 7.80795 8.15570 8.56994 8.90948 9.06818 10.13000 10.41440 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.040787 B = 0.008931 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.320640 B = 3134.395345 C = 3491.506056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.063 3.937 3 Si 1.126 2.874 4 H -0.324 1.324 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.605 6.605 11 N -0.740 5.740 12 C 0.230 3.770 13 H 0.110 0.890 14 C -0.136 4.136 15 C 0.108 3.892 16 N -0.491 5.491 17 C -0.054 4.054 18 C -0.025 4.025 19 N -0.460 5.460 20 C 0.196 3.804 21 H 0.276 0.724 22 H 0.389 0.611 23 H 0.105 0.895 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.167 0.833 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.106 -10.482 -0.804 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.154 4.154 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.632 4.632 8 H 0.087 0.913 9 C 0.366 3.634 10 O -0.496 6.496 11 N -0.392 5.392 12 C 0.120 3.880 13 H 0.127 0.873 14 C -0.175 4.175 15 C -0.014 4.014 16 N -0.176 5.176 17 C -0.185 4.185 18 C -0.174 4.174 19 N -0.177 5.177 20 C -0.069 4.069 21 H 0.087 0.913 22 H 0.222 0.778 23 H 0.124 0.876 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.184 0.816 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 13.852 -7.772 -0.669 15.897 hybrid contribution 0.677 -3.105 -0.396 3.203 sum 14.528 -10.877 -1.065 18.180 Atomic orbital electron populations 1.70669 1.07611 1.31867 1.36163 1.27140 0.95260 1.04958 0.88041 0.82442 0.71435 0.70679 0.79570 1.25612 1.21176 1.20857 1.21997 0.89755 0.96284 1.55160 0.91299 1.18448 0.88556 0.81190 0.75227 1.90168 1.70417 1.30867 1.58159 1.45770 1.02726 1.11492 1.79167 1.19624 0.83930 0.95601 0.88872 0.87282 1.23034 0.95545 0.97362 1.01530 1.22288 0.99532 0.93428 0.86137 1.46540 1.27832 1.28604 1.14627 1.22230 1.05131 1.04094 0.87031 1.22410 0.95847 0.98541 1.00617 1.70033 1.22575 1.24561 1.00564 1.25176 0.91805 0.90966 0.98955 0.91329 0.77784 0.87647 0.89109 0.89443 0.89353 0.81572 0.81297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.82 13.64 55.55 0.76 -24.06 15 2 C 0.06 1.89 5.52 -17.37 -0.10 1.79 15 3 Si 1.13 31.31 25.99 -169.99 -4.42 26.90 15 4 H -0.32 -8.63 7.11 56.52 0.40 -8.23 15 5 H -0.28 -8.20 7.11 56.52 0.40 -7.80 15 6 H -0.28 -7.95 6.78 56.52 0.38 -7.56 15 7 C -0.60 -17.26 9.96 -35.63 -0.36 -17.62 15 8 H 0.07 1.95 8.05 -52.49 -0.42 1.53 15 9 C 0.56 15.17 7.56 -12.99 -0.10 15.07 15 10 O -0.60 -17.98 11.78 5.20 0.06 -17.92 15 11 N -0.74 -15.76 5.15 -55.13 -0.28 -16.04 15 12 C 0.23 4.10 3.22 -67.84 -0.22 3.88 15 13 H 0.11 2.09 7.66 -51.93 -0.40 1.69 15 14 C -0.14 -1.49 6.85 -25.21 -0.17 -1.67 15 15 C 0.11 1.09 7.78 -3.05 -0.02 1.07 15 16 N -0.49 -7.38 3.61 -112.29 -0.41 -7.78 15 17 C -0.05 -0.77 12.04 -16.45 -0.20 -0.97 15 18 C -0.03 -0.44 11.86 -17.90 -0.21 -0.65 15 19 N -0.46 -10.30 11.26 -10.56 -0.12 -10.42 15 20 C 0.20 3.86 8.21 -154.86 -1.27 2.58 15 21 H 0.28 7.84 8.72 -40.82 -0.36 7.49 15 22 H 0.39 7.28 8.36 -40.82 -0.34 6.94 15 23 H 0.11 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.09 0.91 7.80 -51.93 -0.41 0.51 15 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.17 1.68 8.06 -52.49 -0.42 1.25 15 28 H 0.17 2.39 8.06 -52.49 -0.42 1.97 15 LS Contribution 246.58 15.07 3.72 3.72 Total: -1.00 -37.16 246.58 -6.19 -43.35 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.85 Total: -1.23 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -2.65 Total: 3.50 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.05 Total: -58.31 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.06 Total: -17.92 kcal Atomic # 14 Polarization: 31.31 SS G_CDS: -4.42 Total: 26.90 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -37.16 -6.19 -43.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141290358.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.237 kcal (2) G-P(sol) polarization free energy of solvation -37.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds